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4ACA
Asym. Unit
Info
Asym.Unit (658 KB)
Biol.Unit 1 (159 KB)
Biol.Unit 2 (163 KB)
Biol.Unit 3 (173 KB)
Biol.Unit 4 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS, APO FORM
Authors
:
M. Leibundgut, C. Frick, M. Thanbichler, A. Boeck, N. Ban
Date
:
14 Dec 11 (Deposition) - 07 Nov 12 (Release) - 07 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Selenocysteine, Translation, Secis Element, Ef-Sec, Sec-Trna(Sec)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Leibundgut, C. Frick, M. Thanbichler, A. Bock, N. Ban
Selenocysteine Trna-Specific Elongation Factor Selb Is A Structural Chimaera Of Elongation And Initiation Factors.
Embo J. V. 24 11 2005
[
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Hetero Components
(4, 31)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
2a: S-(METHYLMERCURY)-L-CYSTEINE (CMHa)
2b: S-(METHYLMERCURY)-L-CYSTEINE (CMHb)
2c: S-(METHYLMERCURY)-L-CYSTEINE (CMHc)
2d: S-(METHYLMERCURY)-L-CYSTEINE (CMHd)
2e: S-(METHYLMERCURY)-L-CYSTEINE (CMHe)
2f: S-(METHYLMERCURY)-L-CYSTEINE (CMHf)
2g: S-(METHYLMERCURY)-L-CYSTEINE (CMHg)
2h: S-(METHYLMERCURY)-L-CYSTEINE (CMHh)
2i: S-(METHYLMERCURY)-L-CYSTEINE (CMHi)
2j: S-(METHYLMERCURY)-L-CYSTEINE (CMHj)
2k: S-(METHYLMERCURY)-L-CYSTEINE (CMHk)
2l: S-(METHYLMERCURY)-L-CYSTEINE (CMHl)
2m: S-(METHYLMERCURY)-L-CYSTEINE (CMHm)
2n: S-(METHYLMERCURY)-L-CYSTEINE (CMHn)
2o: S-(METHYLMERCURY)-L-CYSTEINE (CMHo)
2p: S-(METHYLMERCURY)-L-CYSTEINE (CMHp)
3a: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCa)
3b: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCb)
3c: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCc)
3d: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCd)
3e: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCe)
3f: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCf)
3g: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCg)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
1
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
CMH
16
Mod. Amino Acid
S-(METHYLMERCURY)-L-CYSTEINE
3
DXC
7
Ligand/Ion
(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4
SO4
7
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:74 , ARG B:262 , ARG C:43
BINDING SITE FOR RESIDUE SO4 B1471
02
AC2
SOFTWARE
LYS B:197 , GLY B:198 , LYS C:55
BINDING SITE FOR RESIDUE SO4 B1472
03
AC3
SOFTWARE
ILE B:47 , ASP B:48 , ILE B:49 , GLY B:50 , PHE B:51 , VAL B:202 , GLN B:233 , ARG C:-2 , PRO C:195 , DXC C:1476
BINDING SITE FOR RESIDUE DXC B1473
04
AC4
SOFTWARE
ARG A:230 , SER A:238 , PRO B:96 , LYS B:97 , THR B:98 , MET B:104 , LEU B:105 , ILE B:139 , THR B:143 , ILE B:288
BINDING SITE FOR RESIDUE 5GP B1474
05
AC5
SOFTWARE
ASP C:108 , HIS C:109 , LYS C:284 , SER C:286 , ASP C:287 , SO4 C:1472
BINDING SITE FOR RESIDUE SO4 C1471
06
AC6
SOFTWARE
HIS C:144 , LYS C:147 , ASP C:287 , SO4 C:1471
BINDING SITE FOR RESIDUE SO4 C1472
07
AC7
SOFTWARE
ARG C:465
BINDING SITE FOR RESIDUE SO4 C1473
08
AC8
SOFTWARE
HIS C:13 , LYS C:97 , THR C:98 , GLN C:99
BINDING SITE FOR RESIDUE SO4 C1474
09
AC9
SOFTWARE
PRO B:195 , ILE B:196 , ILE C:47 , ILE C:49 , GLY C:50 , PHE C:51 , VAL C:202 , GLN C:233
BINDING SITE FOR RESIDUE DXC C1475
10
BC1
SOFTWARE
ILE B:196 , DXC B:1473 , ARG C:-2 , PRO C:-1 , HIS C:0 , MET C:1 , ILE C:196 , ALA C:199 , ARG C:230 , SER C:231
BINDING SITE FOR RESIDUE DXC C1476
11
BC2
SOFTWARE
PRO C:96 , THR C:98 , GLY C:101 , ARG C:131 , ILE C:139 , LYS C:290 , LEU C:368
BINDING SITE FOR RESIDUE DXC C1477
12
BC3
SOFTWARE
SER C:121 , ASP C:122 , ALA C:124 , THR C:126 , THR C:158 , PHE C:160 , LEU C:392 , ARG C:393 , GLU C:394 , GLU C:427
BINDING SITE FOR RESIDUE DXC C1478
13
BC4
SOFTWARE
THR C:126 , GLU C:133 , LEU C:392 , SER C:425 , ASN C:462
BINDING SITE FOR RESIDUE DXC C1479
14
BC5
SOFTWARE
ARG C:131 , ILE C:135 , SER C:138 , LYS C:290 , GLU C:331
BINDING SITE FOR RESIDUE DXC C1480
15
BC6
SOFTWARE
GLU C:331
BINDING SITE FOR RESIDUE SO4 C1481
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 16)
Info
All SCOP Domains
1a: SCOP_d4acaa3 (A:272-387)
1b: SCOP_d4acab3 (B:272-387)
1c: SCOP_d4acac3 (C:272-387)
1d: SCOP_d4acad3 (D:272-387)
2a: SCOP_d4acaa1 (A:180-271)
2b: SCOP_d4acab1 (B:180-271)
2c: SCOP_d4acab2 (B:390-468)
2d: SCOP_d4acac1 (C:180-271)
2e: SCOP_d4acac2 (C:390-468)
2f: SCOP_d4acad1 (D:180-271)
2g: SCOP_d4acad2 (D:390-468)
2h: SCOP_d4acaa2 (A:390-468)
3a: SCOP_d4acaa4 (A:1-179)
3b: SCOP_d4acab4 (B:1-179)
3c: SCOP_d4acac4 (C:1-179)
3d: SCOP_d4acad4 (D:2-179)
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Classes
(
)
(
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(
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor SelB, domain 3
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
1a
d4acaa3
A:272-387
1b
d4acab3
B:272-387
1c
d4acac3
C:272-387
1d
d4acad3
D:272-387
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor SelB, domains 2 and 4
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
2a
d4acaa1
A:180-271
2b
d4acab1
B:180-271
2c
d4acab2
B:390-468
2d
d4acac1
C:180-271
2e
d4acac2
C:390-468
2f
d4acad1
D:180-271
2g
d4acad2
D:390-468
2h
d4acaa2
A:390-468
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor SelB, N-terminal domain
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
3a
d4acaa4
A:1-179
3b
d4acab4
B:1-179
3c
d4acac4
C:1-179
3d
d4acad4
D:2-179
[
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CATH Domains
(0, 0 ; only for superseded entry 1WB2: 3,14)
Info
all CATH domains
1a: CATH_1wb2C01 ()
1b: CATH_1wb2D01 ()
1c: CATH_1wb2B01 ()
1d: CATH_1wb2A01 ()
2a: CATH_1wb2C03 ()
2b: CATH_1wb2D03 ()
2c: CATH_1wb2A02 ()
2d: CATH_1wb2C02 ()
2e: CATH_1wb2D02 ()
2f: CATH_1wb2B02 ()
2g: CATH_1wb2A03 ()
2h: CATH_1wb2B03 ()
3a: CATH_1wb2C04 ()
3b: CATH_1wb2A04 ()
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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