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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CCR5 CHEMOKINE RECEPTOR
 
Authors :  Q. Tan, Y. Zhu, G. W. Han, J. Li, G. Fenalti, H. Liu, V. Cherezov, R. C. Stev Network (Gpcr), Q. Zhao, B. Wu
Date :  19 Aug 13  (Deposition) - 11 Sep 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Human Ccr5 Chemokine Receptor, Anti-Hiv Agent, Novel Protein Engineering, Gpcr Network, Membrane Protein, Psi-Biology, Structural Genomics, Seven Transmembrane Helices, G Protein-Coupled Receptor, Membrane, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Tan, Y. Zhu, J. Li, Z. Chen, G. W. Han, I. Kufareva, T. Li, L. Ma, G. Fenalti, J. Li, W. Zhang, X. Xie, H. Yang, H. Jiang, V. Cherezov, H. Liu, R. C. Stevens, Q. Zhao, B. Wu
Structure Of The Ccr5 Chemokine Receptor-Hiv Entry Inhibito Maraviroc Complex.
Science V. 341 1387 2013
PubMed-ID: 24030490  |  Reference-DOI: 10.1126/SCIENCE.1241475

(-) Compounds

Molecule 1 - CHIMERA PROTEIN OF C-C CHEMOKINE RECEPTOR TYPE 5 AND RUBREDOXIN
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFASTBAC
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Fragment: RUBREDOXIN INSERTED INTO CCR5 BETWEEN RESIDUE 223 AND 227
    Gene: CCR5, CCR5_HUMAN, CMKBR5, RD
    Mutation: YES
    Organism Scientific: HOMO SAPIENS, CLOSTRIDIUM PASTEURIANUM
    Organism Taxid: 9606, 1501
    Synonym: C-C CKR-5, CC-CKR-5, CCR-5, CCR5, CHEMR13, HIV-1 FUSION CORECEPTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1MRV2Ligand/Ion4,4-DIFLUORO-N-[(1S)-3-{(3-EXO)-3-[3-METHYL-5-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-4-YL]-8-AZABICYCLO[3.2.1]OCT-8-YL}-1-PHENYLPROPYL]CYCLOHEXANECARBOXAMIDE
2OLC10Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1MRV1Ligand/Ion4,4-DIFLUORO-N-[(1S)-3-{(3-EXO)-3-[3-METHYL-5-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-4-YL]-8-AZABICYCLO[3.2.1]OCT-8-YL}-1-PHENYLPROPYL]CYCLOHEXANECARBOXAMIDE
2OLC6Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1MRV1Ligand/Ion4,4-DIFLUORO-N-[(1S)-3-{(3-EXO)-3-[3-METHYL-5-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-4-YL]-8-AZABICYCLO[3.2.1]OCT-8-YL}-1-PHENYLPROPYL]CYCLOHEXANECARBOXAMIDE
2OLC4Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
3ZN-1Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:37 , TRP A:86 , TYR A:89 , TYR A:108 , PHE A:109 , PHE A:182 , THR A:195 , TRP A:248 , TYR A:251 , THR A:259 , GLU A:283BINDING SITE FOR RESIDUE MRV A 1101
02AC2SOFTWARECYS A:1006 , CYS A:1009 , CYS A:1039 , CYS A:1042BINDING SITE FOR RESIDUE ZN A 1102
03AC3SOFTWAREPHE A:158 , PRO B:35BINDING SITE FOR RESIDUE OLC A 1103
04AC4SOFTWAREPRO A:84 , PHE A:85 , HIS A:88 , OLC A:1105 , HOH A:1219BINDING SITE FOR RESIDUE OLC A 1104
05AC5SOFTWARESER A:38 , PRO A:84 , HIS A:88 , OLC A:1104BINDING SITE FOR RESIDUE OLC A 1105
06AC6SOFTWAREPHE A:78 , THR A:99 , GLN A:102 , TRP A:153 , HOH A:1212BINDING SITE FOR RESIDUE OLC A 1106
07AC7SOFTWARELEU A:33 , VAL A:281 , THR A:284 , LEU A:285 , THR A:288BINDING SITE FOR RESIDUE OLC A 1107
08AC8SOFTWARETYR A:214 , ARG A:235 , PHE A:238BINDING SITE FOR RESIDUE OLC A 1108
09AC9SOFTWARETYR B:37 , TRP B:86 , TYR B:89 , TYR B:108 , PHE B:109 , PHE B:182 , LYS B:191 , THR B:195 , TRP B:248 , TYR B:251 , THR B:259 , GLU B:283BINDING SITE FOR RESIDUE MRV B 1101
10BC1SOFTWARECYS B:1006 , CYS B:1009 , CYS B:1039 , CYS B:1042BINDING SITE FOR RESIDUE ZN B 1102
11BC2SOFTWAREOLC B:1105BINDING SITE FOR RESIDUE OLC B 1103
12BC3SOFTWAREALA B:30 , PRO B:34 , SER B:38 , HOH B:1210BINDING SITE FOR RESIDUE OLC B 1104
13BC4SOFTWAREALA B:278 , OLC B:1103BINDING SITE FOR RESIDUE OLC B 1105
14BC5SOFTWAREVAL B:234 , ARG B:235 , PHE B:238 , HOH B:1226BINDING SITE FOR RESIDUE OLC B 1106

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:20 -A:269
2A:101 -A:178
3B:20 -B:269
4B:101 -B:178

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MBS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MBS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MBS)

(-) Exons   (0, 0)

(no "Exon" information available for 4MBS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....ee.....hhhhh.....hhhhh...........hhh.eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mbs A   19 PCQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ  313
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218    ||1005      1015      1025      1035      1045       227       237       247       257       267       277       287       297       307      
                                                                                                                                                                                                                                      223|                                                 1054|                                                                                      
                                                                                                                                                                                                                                      1001                                                   227                                                                                      


Chain B from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.....ee.....hhhhh.....hhhhh...........hhh.eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mbs B   19 PCQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ  313
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218    ||1005      1015      1025      1035      1045       227       237       247       257       267       277       287       297       307      
                                                                                                                                                                                                                                      223|                                                 1054|                                                                                      
                                                                                                                                                                                                                                      1001                                                   227
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MBS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MBS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MBS)

(-) Gene Ontology  (44, 44)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CCR5_HUMAN | P51681: 1nd8 1ne0 1opn 1opt 1opw 2l87 2mzx 2rll 2rrs 5uiw
        RUBR_CLOPA | P00268: 1b13 1b2j 1b2o 1be7 1bfy 1c09 1fhh 1fhm 1irn 1iro 1r0f 1r0g 1r0h 1r0i 1r0j 1smm 1smu 1smw 1t9o 1t9p 1t9q 2pve 4rxn 4xnv 4xnw 5rxn 5uiw 5vbl

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