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(-) Description

Title :  SOLID STATE NMR STRUCTURE OF THE PF1 MAJOR COAT PROTEIN IN MAGNETICALLY ALIGNED BACTERIOPHAGE
 
Authors :  D. S. Thiriot, A. A. Nevzorov, L. Zagyanskiy, C. H. Wu, S. J. Opella
Date :  02 Jun 03  (Deposition) - 10 Aug 04  (Release) - 06 Jun 12  (Revision)
Method :  SOLID-STATE NMR
Resolution :  NOT APPLICABLE
Chains :  Asym. Unit :  A  (27x)
Biol. Unit 1:  A  (1x)
Keywords :  Viral Protein, Helical Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. S. Thiriot, A. A. Nevzorov, L. Zagyanskiy, C. H. Wu, S. J. Opella
Structure Of The Coat Protein In Pf1 Bacteriophage Determined By Solid-State Nmr Spectroscopy.
J. Mol. Biol. V. 341 869 2004
PubMed-ID: 15288792  |  Reference-DOI: 10.1016/J.JMB.2004.06.038

(-) Compounds

Molecule 1 - COAT PROTEIN B
    ChainsA
    Organism ScientificPSEUDOMONAS PHAGE PF1
    Organism Taxid10871
    Other DetailsPSEUDOMONAS AERUGINOSA (ATCC #25102) WAS THE HOST BACTERIA.
    SynonymMAJOR COAT PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit (27x)A
Biological Unit 1 (1x)A

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with CAPSD_BPPF1 | P03621 from UniProtKB/Swiss-Prot  Length:82

    Alignment length:46
                                    46        56        66        76      
           CAPSD_BPPF1   37 GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA 82
               SCOP domains d1pjfa_ A:                                     SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .............................................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                  1pjf A  1 GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA 46
                                    10        20        30        40      

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

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(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (CAPSD_BPPF1 | P03621)
cellular component
    GO:0019029    helical viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_BPPF1 | P036211ifm 1ifn 1pfi 1ql1 1ql2 1zn5 2ifm 2ifn 2klv 2ksj 2xkm 3ifm 4ifm

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