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(-) Description

Title :  TWO FORMS OF PF1 INOVIRUS: X-RAY DIFFRACTION STUDIES ON A STRUCTURAL PHASE TRANSITION AND A CALCULATED LIBRATION NORMAL MODE OF THE ASYMMETRIC UNIT
 
Authors :  D. A. Marvin
Date :  31 Jan 94  (Deposition) - 31 Jul 94  (Release) - 24 Feb 09  (Revision)
Method :  FIBER DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (35x)
Keywords :  Virus, Helical Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. A. Marvin, C. Nave, M. Bansal, R. D. Hale, E. K. H. Salje
Two Forms Of Pf1 Inovirus: X-Ray Diffraction Studies On A Structural Phase Transition And A Calculated Libration Normal Mode Of The Asymmetric Unit
Phase Transitions V. 39 45 1992
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INOVIRUS
    ChainsA
    EngineeredYES
    Organism ScientificPSEUDOMONAS PHAGE PF1
    Organism Taxid10871
    StrainPF1 MAJOR

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (35x)A

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with CAPSD_BPPF1 | P03621 from UniProtKB/Swiss-Prot  Length:82

    Alignment length:46
                                    46        56        66        76      
           CAPSD_BPPF1   37 GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA 82
               SCOP domains d1ifma_ A:                                     SCOP domains
               CATH domains 1ifmA00 A:1-46                                 CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                  1ifm A  1 GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA 46
                                    10        20        30        40      

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Asymmetric Unit

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Asymmetric Unit

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(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (CAPSD_BPPF1 | P03621)
cellular component
    GO:0019029    helical viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_BPPF1 | P036211ifn 1pfi 1pjf 1ql1 1ql2 1zn5 2ifm 2ifn 2klv 2ksj 2xkm 3ifm 4ifm

(-) Related Entries Specified in the PDB File

1ifd 1ifi 1ifj 1ifk 1ifl 1ifn 2ifm 2ifo 3ifm 4ifm