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(-) Description

Title :  CONSENSUS STRUCTURE OF PF1 FILAMENTOUS BACTERIOPHAGE FROM X-RAY FIBRE DIFFRACTION AND SOLID-STATE NMR
 
Authors :  S. K. Straus, W. R. P Scott, C. D. Schwieters, D. A. Marvin
Date :  09 Jul 10  (Deposition) - 24 Nov 10  (Release) - 27 Apr 11  (Revision)
Method :  FIBER DIFFRACTION; SOLID-STATE NMR
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Viral Protein, Capsid Protein, Transmembrane, Virion, Virus Coat Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Straus, W. R. Scott, C. D. Schwieters, D. A. Marvin
Consensus Structure Of Pf1 Filamentous Bacteriophage From X-Ray Fibre Diffraction And Solid-State Nmr.
Eur. Biophys. J. V. 40 221 2011
PubMed-ID: 21082179  |  Reference-DOI: 10.1007/S00249-010-0640-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CAPSID PROTEIN G8P
    Atcc: 25102-B1
    Chains: A
    Fragment: RESIDUES 37-82
    Organism Scientific: PSEUDOMONAS PHAGE PF1
    Organism Taxid: 10871
    Synonym: MAJOR COAT PROTEIN, GENE 8 PROTEIN, G8P, COAT PROTEIN B, PF1 PHAGE COAT PROTEIN GENE 8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with CAPSD_BPPF1 | P03621 from UniProtKB/Swiss-Prot  Length:82

    Alignment length:46
                                    46        56        66        76      
           CAPSD_BPPF1   37 GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA 82
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains Phage_Coat_B-2xkmA01 A:1-46                    Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                  2xkm A  1 GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA 46
                                    10        20        30        40
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Asymmetric/Biological Unit
(-)
Clan: Inovirus-Coat (9)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CAPSD_BPPF1 | P03621)
cellular component
    GO:0019029    helical viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_BPPF1 | P03621: 1ifm 1ifn 1pfi 1pjf 1ql1 1ql2 1zn5 2ifm 2ifn 2klv 2ksj 3ifm 4ifm

(-) Related Entries Specified in the PDB File

1ifm
1ifn TWO FORMS OF PF1 INOVIRUS: X-RAY DIFFRACTION STUDIES ON ASTRUCTURAL PHASE TRANSITION AND A CALCULATED LIBRATION
1pfi
1pjf SOLID STATE NMR STRUCTURE OF THE PF1 MAJOR COAT PROTEIN INMAGNETICALLY ALIGNED BACTERIOPHAGE
1ql1 INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY
1ql2 INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY
2ifm
2ifn
3ifm
4ifm