PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1N0L
Biol. Unit 1
Info
Asym.Unit (113 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (55 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE PAPD CHAPERONE (C-TERMINALLY 6X HISTIDINE-TAGGED) BOUND TO THE PAPE PILUS SUBUNIT (N-TERMINAL-DELETED) FROM UROPATHOGENIC E. COLI
Authors
:
F. G. Sauer, J. S. Pinkner, G. Waksman, S. J. Hultgren
Date
:
14 Oct 02 (Deposition) - 11 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Immunoglobulin-Like Fold, Donor Strand Complemenation, Donor Strand Exchange, Chaperone Priming, Pilus Fiber Assembly
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. G. Sauer, J. S. Pinkner, G. Waksman, S. J. Hultgren
Chaperone Priming Of Pilus Subunits Facilitates A Topological Transition That Drives Fiber Formation
Cell(Cambridge, Mass. ) V. 111 543 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PILI_CHAPERONE (A:78-95)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PILI_CHAPERONE
PS00635
Gram-negative pili assembly chaperone signature.
PAPD_ECOLX
99-116
1
A:78-95
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1n0la2 (A:125-215)
1b: SCOP_d1n0lc2 (C:125-215)
2a: SCOP_d1n0lb_ (B:)
2b: SCOP_d1n0ld_ (D:)
3a: SCOP_d1n0la1 (A:1-124)
3b: SCOP_d1n0lc1 (C:1-124)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
Periplasmic chaperone C-domain
(38)
Family
:
Periplasmic chaperone C-domain
(33)
Protein domain
:
PapD
(14)
Escherichia coli [TaxId: 562]
(14)
1a
d1n0la2
A:125-215
1b
d1n0lc2
C:125-215
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Pilus subunits
(59)
Protein domain
:
PapE pilus subunit
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d1n0lb_
B:
2b
d1n0ld_
D:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
PapD-like
(47)
Family
:
Pilus chaperone
(36)
Protein domain
:
Pilus chaperone PapD, N-domain
(14)
Escherichia coli [TaxId: 562]
(14)
3a
d1n0la1
A:1-124
3b
d1n0lc1
C:1-124
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1n0lA02 (A:122-212)
1b: CATH_1n0lC02 (C:122-212)
2a: CATH_1n0lB00 (B:1-149)
2b: CATH_1n0lD00 (D:1-149)
3a: CATH_1n0lA01 (A:1-121)
3b: CATH_1n0lC01 (C:1-121)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1070, no name defined]
(29)
Escherichia coli. Organism_taxid: 562.
(5)
1a
1n0lA02
A:122-212
1b
1n0lC02
C:122-212
Homologous Superfamily
:
[code=2.60.40.1090, no name defined]
(10)
Escherichia coli. Organism_taxid: 562.
(5)
2a
1n0lB00
B:1-149
2b
1n0lD00
D:1-149
Homologous Superfamily
:
PapD-like
(38)
Escherichia coli. Organism_taxid: 562.
(6)
3a
1n0lA01
A:1-121
3b
1n0lC01
C:1-121
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Fimbrial_1n0lD01 (D:13-149)
1b: PFAM_Fimbrial_1n0lD02 (D:13-149)
2a: PFAM_Pili_assembly_N_1n0lC01 (C:1-121)
2b: PFAM_Pili_assembly_N_1n0lC02 (C:1-121)
3a: PFAM_Pili_assembly_C_1n0lC03 (C:141-204)
3b: PFAM_Pili_assembly_C_1n0lC04 (C:141-204)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Adhesin
(36)
Family
:
Fimbrial
(23)
Escherichia coli
(15)
1a
Fimbrial-1n0lD01
D:13-149
1b
Fimbrial-1n0lD02
D:13-149
Clan
:
E-set
(290)
Family
:
Pili_assembly_N
(20)
Escherichia coli
(8)
2a
Pili_assembly_N-1n0lC01
C:1-121
2b
Pili_assembly_N-1n0lC02
C:1-121
Clan
:
no clan defined [family: Pili_assembly_C]
(20)
Family
:
Pili_assembly_C
(20)
Escherichia coli
(8)
3a
Pili_assembly_C-1n0lC03
C:141-204
3b
Pili_assembly_C-1n0lC04
C:141-204
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (113 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1N0L
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help