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1N0L
Biol. Unit 2
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Asym.Unit (113 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PAPD CHAPERONE (C-TERMINALLY 6X HISTIDINE-TAGGED) BOUND TO THE PAPE PILUS SUBUNIT (N-TERMINAL-DELETED) FROM UROPATHOGENIC E. COLI
Authors
:
F. G. Sauer, J. S. Pinkner, G. Waksman, S. J. Hultgren
Date
:
14 Oct 02 (Deposition) - 11 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Immunoglobulin-Like Fold, Donor Strand Complemenation, Donor Strand Exchange, Chaperone Priming, Pilus Fiber Assembly
(Keyword Search:
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Reference
:
F. G. Sauer, J. S. Pinkner, G. Waksman, S. J. Hultgren
Chaperone Priming Of Pilus Subunits Facilitates A Topological Transition That Drives Fiber Formation
Cell(Cambridge, Mass. ) V. 111 543 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
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No.
Name
Count
Type
Full Name
1
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PILI_CHAPERONE (C:78-95)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PILI_CHAPERONE
PS00635
Gram-negative pili assembly chaperone signature.
PAPD_ECOLX
99-116
1
-
C:78-95
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1n0la2 (A:125-215)
1b: SCOP_d1n0lc2 (C:125-215)
2a: SCOP_d1n0lb_ (B:)
2b: SCOP_d1n0ld_ (D:)
3a: SCOP_d1n0la1 (A:1-124)
3b: SCOP_d1n0lc1 (C:1-124)
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Protein Domains
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
Periplasmic chaperone C-domain
(38)
Family
:
Periplasmic chaperone C-domain
(33)
Protein domain
:
PapD
(14)
Escherichia coli [TaxId: 562]
(14)
1a
d1n0la2
A:125-215
1b
d1n0lc2
C:125-215
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Pilus subunits
(59)
Protein domain
:
PapE pilus subunit
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d1n0lb_
B:
2b
d1n0ld_
D:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
PapD-like
(47)
Family
:
Pilus chaperone
(36)
Protein domain
:
Pilus chaperone PapD, N-domain
(14)
Escherichia coli [TaxId: 562]
(14)
3a
d1n0la1
A:1-124
3b
d1n0lc1
C:1-124
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1n0lA02 (A:122-212)
1b: CATH_1n0lC02 (C:122-212)
2a: CATH_1n0lB00 (B:1-149)
2b: CATH_1n0lD00 (D:1-149)
3a: CATH_1n0lA01 (A:1-121)
3b: CATH_1n0lC01 (C:1-121)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1070, no name defined]
(29)
Escherichia coli. Organism_taxid: 562.
(5)
1a
1n0lA02
A:122-212
1b
1n0lC02
C:122-212
Homologous Superfamily
:
[code=2.60.40.1090, no name defined]
(10)
Escherichia coli. Organism_taxid: 562.
(5)
2a
1n0lB00
B:1-149
2b
1n0lD00
D:1-149
Homologous Superfamily
:
PapD-like
(38)
Escherichia coli. Organism_taxid: 562.
(6)
3a
1n0lA01
A:1-121
3b
1n0lC01
C:1-121
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Fimbrial_1n0lD01 (D:13-149)
1b: PFAM_Fimbrial_1n0lD02 (D:13-149)
2a: PFAM_Pili_assembly_N_1n0lC01 (C:1-121)
2b: PFAM_Pili_assembly_N_1n0lC02 (C:1-121)
3a: PFAM_Pili_assembly_C_1n0lC03 (C:141-204)
3b: PFAM_Pili_assembly_C_1n0lC04 (C:141-204)
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Clan
:
Adhesin
(36)
Family
:
Fimbrial
(23)
Escherichia coli
(15)
1a
Fimbrial-1n0lD01
D:13-149
1b
Fimbrial-1n0lD02
D:13-149
Clan
:
E-set
(290)
Family
:
Pili_assembly_N
(20)
Escherichia coli
(8)
2a
Pili_assembly_N-1n0lC01
C:1-121
2b
Pili_assembly_N-1n0lC02
C:1-121
Clan
:
no clan defined [family: Pili_assembly_C]
(20)
Family
:
Pili_assembly_C
(20)
Escherichia coli
(8)
3a
Pili_assembly_C-1n0lC03
C:141-204
3b
Pili_assembly_C-1n0lC04
C:141-204
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (113 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
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