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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CALMODULIN/NEMATODE CA2+/CALMODULIN DEPENDENT KINASE KINASE FRAGMENT

Authors :   H. Kurokawa, M. Osawa, H. Kurihara, N. Katayama, H. Tokumitsu, M. B. Swindells, M. Kainosho, M. Ikura

Date :   14 Jun 01 (Deposition) - 26 Sep 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Ef-Hand, Calmodulin, Protein-Peptide Complex, Metal Binding Protein/Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Kurokawa, M. Osawa, H. Kurihara, N. Katayama, H. Tokumitsu, M. B. Swindells, M. Kainosho, M. Ikura
Target-Induced Conformational Adaptation Of Calmodulin Revealed By The Crystal Structure Of A Complex With Nematode Ca(2+)/Calmodulin-Dependent Kinase Kinase Peptide
J. Mol. Biol. V. 312 59 2001
PubMed-ID: 11545585 | Reference-DOI: 10.1006/JMBI.2001.4822
(for further references see the PDB file header)

Molecule 1 - CALMODULIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PAS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	AFRICAN CLAWED FROG
	Organism Scientific	:	XENOPUS LAEVIS
	Organism Taxid	:	8355

Molecule 2 - CA2+/CALMODULIN DEPENDENT KINASE KINASE
	Chains	:	B
	EC Number	:	2.7.1.-
	Engineered	:	YES
	Fragment	:	CALMODULIN BINDING DOMAIN (RESIDUES 331-357)
	Other Details	:	THIS SEQUENCE OCCURS NATURALLY IN CAENORHABDITIS ELEGANS
	Synthetic	:	YES

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , GLU A:31 , HOH A:467	BINDING SITE FOR RESIDUE CA A 361
2	AC2	SOFTWARE	ASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , GLU A:67 , HOH A:492	BINDING SITE FOR RESIDUE CA A 362
3	AC3	SOFTWARE	ASP A:93 , ASP A:95 , ASN A:97 , TYR A:99 , GLU A:104	BINDING SITE FOR RESIDUE CA A 363
4	AC4	SOFTWARE	ASP A:129 , ASP A:131 , ASP A:133 , GLN A:135 , GLU A:140	BINDING SITE FOR RESIDUE CA A 364

(no "SS Bond" information available for 1IQ5)

(no "Cis Peptide Bond" information available for 1IQ5)

(no "SAP(SNP)/Variant" information available for 1IQ5)

Asymmetric/Biological Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	CAM2B_XENLA	8-43 44-79 81-116 117-149	4	A:7-42 A:43-78 A:80-115 A:116-147
				CAM2A_XENLA	8-43 44-79 81-116 117-149	4	A:7-42 A:43-78 A:80-115 A:116-147
				CALM1_XENLA	8-43 44-79 81-116 117-149	4	A:7-42 A:43-78 A:80-115 A:116-147
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	CAM2B_XENLA	21-33 57-69 94-106 130-142	4	A:20-32 A:56-68 A:93-105 A:129-141
				CAM2A_XENLA	21-33 57-69 94-106 130-142	4	A:20-32 A:56-68 A:93-105 A:129-141
				CALM1_XENLA	21-33 57-69 94-106 130-142	4	A:20-32 A:56-68 A:93-105 A:129-141

(no "Exon" information available for 1IQ5)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:144
 aligned with CALM1_XENLA | P0DP33 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:144
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144    
          CALM1_XENLA     5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
               SCOP domains d1iq5a_ A: Calmodulin                                                                                                                            SCOP domains
               CATH domains -1iq5A01 A:5-81 EF-hand                                                       1iq5A02 A:82-146 EF-hand                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ---EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-78             -EF_HAND_2  PDB: A:80-115            EF_HAND_2  PDB: A:116-147        PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------ PROSITE (6)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1iq5 A   4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143

Chain A from PDB  Type:PROTEIN  Length:144
 aligned with CAM2A_XENLA | P0DP34 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:144
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144    
          CAM2A_XENLA     5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
               SCOP domains d1iq5a_ A: Calmodulin                                                                                                                            SCOP domains
               CATH domains -1iq5A01 A:5-81 EF-hand                                                       1iq5A02 A:82-146 EF-hand                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ---EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-78             -EF_HAND_2  PDB: A:80-115            EF_HAND_2  PDB: A:116-147        PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------ PROSITE (4)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1iq5 A   4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143

Chain A from PDB  Type:PROTEIN  Length:144
 aligned with CAM2B_XENLA | P0DP35 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:144
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144    
          CAM2B_XENLA     5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
               SCOP domains d1iq5a_ A: Calmodulin                                                                                                                            SCOP domains
               CATH domains -1iq5A01 A:5-81 EF-hand                                                       1iq5A02 A:82-146 EF-hand                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ---EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-78             -EF_HAND_2  PDB: A:80-115            EF_HAND_2  PDB: A:116-147        PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------ PROSITE (5)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1iq5 A   4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143

Chain B from PDB  Type:PROTEIN  Length:24
                                                        
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                 1iq5 B 334 IPRLDTLILVKAMGHRKRFGNPFR 357
                                   343       353

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: EF Hand-like (739)

Superfamily: EF-hand (657)

Family: Calmodulin-like (356)

Protein domain: Calmodulin (152)

African clawed frog (Xenopus laevis) [TaxId: 8355] (13)

d1iq5a_

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Recoverin; domain 1 (474)

Homologous Superfamily: EF-hand (412)

African clawed frog (Xenopus laevis) (12)

1a	1iq5A01	A:5-81
1b	1iq5A02	A:82-146

(no "Pfam Domain" information available for 1IQ5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (CAM2A_XENLA | P0DP34)

Chain A (CAM2B_XENLA | P0DP35)

Chain A (CALM1_XENLA | P0DP33)

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 1iq5)

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Description

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Ligands, Modified Residues, Ions (1, 4)

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