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(-) Description

Title :  REFINED SOLUTION STRUCTURE OF CALMODULIN C-TERMINAL DOMAIN
 
Authors :  J. Chou, S. Li, A. Bax
Date :  24 Jun 00  (Deposition) - 22 Sep 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Calcium Binding, Ef Hand, Four-Helix Bundle, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Chou, S. Li, A. Bax
Study Of Conformational Rearrangement And Refinement Of Structural Homology Models By The Use Of Heteronuclear Dipolar Couplings.
J. Biomol. Nmr V. 18 217 2000
PubMed-ID: 11142512  |  Reference-DOI: 10.1023/A:1026563923774
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALMODULIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PTNCO12
    Fragment: C-TERMINAL DOMAIN
    Organism Common: AFRICAN CLAWED FROG
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1F71)

(-) Sites  (0, 0)

(no "Site" information available for 1F71)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1F71)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1F71)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1F71)

(-) PROSITE Motifs  (2, 3)

NMR Structure (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CAM2B_XENLA8-43
44-79
81-116
117-149		  1-
-
-
A:116-148
CAM2A_XENLA8-43
44-79
81-116
117-149		  1-
-
-
A:116-148
CALM1_XENLA8-43
44-79
81-116
117-149		  1-
-
-
A:116-148
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CAM2B_XENLA21-33
57-69
94-106
130-142		  2-
-
A:93-105
A:129-141
CAM2A_XENLA21-33
57-69
94-106
130-142		  2-
-
A:93-105
A:129-141
CALM1_XENLA21-33
57-69
94-106
130-142		  2-
-
A:93-105
A:129-141

(-) Exons   (0, 0)

(no "Exon" information available for 1F71)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with CALM1_XENLA | P0DP33 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:67
                                    92       102       112       122       132       142       
          CALM1_XENLA    83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1f71a_ A: Calmodulin                                               SCOP domains
               CATH domains 1f71A00 A:82-148 EF-hand                                            CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh......eeehhhhhhhhhhh....hhhhhhhhhhhh......eeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) EF_HAND_2  PDB: - UniProt: 81-116 EF_HAND_2  PDB: A:116-148         PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -----------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (5)
                 Transcript ------------------------------------------------------------------- Transcript
                 1f71 A  82 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 148
                                    91       101       111       121       131       141       


Chain A from PDB  Type:PROTEIN  Length:67
 aligned with CAM2A_XENLA | P0DP34 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:67
                                    92       102       112       122       132       142       
          CAM2A_XENLA    83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1f71a_ A: Calmodulin                                               SCOP domains
               CATH domains 1f71A00 A:82-148 EF-hand                                            CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh......eeehhhhhhhhhhh....hhhhhhhhhhhh......eeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) EF_HAND_2  PDB: - UniProt: 81-116 EF_HAND_2  PDB: A:116-148         PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -----------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (6)
                 Transcript ------------------------------------------------------------------- Transcript
                 1f71 A  82 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 148
                                    91       101       111       121       131       141       


Chain A from PDB  Type:PROTEIN  Length:67
 aligned with CAM2B_XENLA | P0DP35 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:67
                                    92       102       112       122       132       142       
          CAM2B_XENLA    83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1f71a_ A: Calmodulin                                               SCOP domains
               CATH domains 1f71A00 A:82-148 EF-hand                                            CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh......eeehhhhhhhhhhh....hhhhhhhhhhhh......eeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) EF_HAND_2  PDB: - UniProt: 81-116 EF_HAND_2  PDB: A:116-148         PROSITE (3)
                PROSITE (4) -----------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (4)
                 Transcript ------------------------------------------------------------------- Transcript
                 1f71 A  82 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 148
                                    91       101       111       121       131       141
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1F71)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (CALM1_XENLA | P0DP33)

Chain A   (CAM2A_XENLA | P0DP34)

Chain A   (CAM2B_XENLA | P0DP35)

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(no "Cis Peptide Bonds" information available for 1f71)
 

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  1f71
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  CALM1_XENLA | P0DP33
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  CAM2A_XENLA | P0DP34
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  CAM2B_XENLA | P0DP35
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM1_XENLA | P0DP33: 1aji 1cfc 1cfd 1cff 1ckk 1cm1 1cm4 1deg 1dmo 1f70 1iq5 1k90 1k93 1lvc 1mux 1nkf 1nwd 1qiv 1qiw 1sk6 1sy9 1up5 1x02 1y0v 2col 2i08 2k3s 2kdu 2llo 2llq 2mes 2rrt 3cln 4r8g 5t0x
        CAM2A_XENLA | P0DP34: 1aji 1cfc 1cfd 1cff 1ckk 1cm1 1cm4 1deg 1dmo 1f70 1iq5 1k90 1k93 1lvc 1mux 1nkf 1nwd 1qiv 1qiw 1sk6 1sy9 1up5 1x02 1y0v 2col 2i08 2k3s 2kdu 2llo 2llq 2mes 2rrt 3cln 4r8g 5t0x
        CAM2B_XENLA | P0DP35: 1aji 1cfc 1cfd 1cff 1ckk 1cm1 1cm4 1deg 1dmo 1f70 1iq5 1k90 1k93 1lvc 1mux 1nkf 1nwd 1qiv 1qiw 1sk6 1sy9 1up5 1x02 1y0v 2col 2i08 2k3s 2kdu 2llo 2llq 2mes 2rrt 3cln 4r8g 5t0x

(-) Related Entries Specified in the PDB File

1cfc SOLUTION STRUCTURE OF CALMODULIN REFINED WITHOUT DIPOLAR COUPLINGS
1dmo SOLUTION STRUCTURE OF CALMODULIN REFINED WITHOUT DIPOLAR COUPLINGS
1f70 N-TERMINAL DOMAIN OF CALMODULIN REFINED WITH DIPOLAR COUPLINGS