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(-) Description

Title :  CALMODULIN, NMR, 30 STRUCTURES
 
Authors :  M. Zhang, T. Tanaka, M. Ikura
Date :  24 Apr 96  (Deposition) - 01 Aug 96  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
Keywords :  Calcium-Induced Conformational Change, Calcium-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zhang, T. Tanaka, M. Ikura
Calcium-Induced Conformational Transition Revealed By The Solution Structure Of Apo Calmodulin.
Nat. Struct. Biol. V. 2 758 1995
PubMed-ID: 7552747  |  Reference-DOI: 10.1038/NSB0995-758
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALMODULIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Gene: XENOPUS LAEVIS
    Expression System Plasmid: PAS
    Expression System Taxid: 562
    Gene: XENOPUS LAEVIS
    Organism Common: AFRICAN CLAWED FROG
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355

 Structural Features

(-) Chains, Units

  
NMR Structure (30x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1DMO)

(-) Sites  (0, 0)

(no "Site" information available for 1DMO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DMO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DMO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DMO)

(-) PROSITE Motifs  (2, 8)

NMR Structure (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CAM2B_XENLA8-43
44-79
81-116
117-149		  4A:7-42
A:43-78
A:80-115
A:116-148
CAM2A_XENLA8-43
44-79
81-116
117-149		  4A:7-42
A:43-78
A:80-115
A:116-148
CALM1_XENLA8-43
44-79
81-116
117-149		  4A:7-42
A:43-78
A:80-115
A:116-148
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CAM2B_XENLA21-33
57-69
94-106
130-142		  4A:20-32
A:56-68
A:93-105
A:130-141
CAM2A_XENLA21-33
57-69
94-106
130-142		  4A:20-32
A:56-68
A:93-105
A:130-141
CALM1_XENLA21-33
57-69
94-106
130-142		  4A:20-32
A:56-68
A:93-105
A:130-141

(-) Exons   (0, 0)

(no "Exon" information available for 1DMO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
 aligned with CALM1_XENLA | P0DP33 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:148
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141        
          CALM1_XENLA     2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1dmoa_ A: Calmodulin                                                                                                                                SCOP domains
               CATH domains 1dmoA00 A:1-148 EF-hand                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh........eehhhhhhhhhhh.....hhhhhhhhhhh......ee.hhhhhhhhhhhh.....hhhhhhhhh.........eehhhhhhhhhhh.....hhhhhhhhhh.......ee.hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-78             -EF_HAND_2  PDB: A:80-115            EF_HAND_2  PDB: A:116-148         PROSITE (3)
                PROSITE (4) -------------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (4)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dmo A   1 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREANIDGDGQVNYEEFVQMMTAK 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        


Chain A from PDB  Type:PROTEIN  Length:148
 aligned with CAM2A_XENLA | P0DP34 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:148
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141        
          CAM2A_XENLA     2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1dmoa_ A: Calmodulin                                                                                                                                SCOP domains
               CATH domains 1dmoA00 A:1-148 EF-hand                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh........eehhhhhhhhhhh.....hhhhhhhhhhh......ee.hhhhhhhhhhhh.....hhhhhhhhh.........eehhhhhhhhhhh.....hhhhhhhhhh.......ee.hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-78             -EF_HAND_2  PDB: A:80-115            EF_HAND_2  PDB: A:116-148         PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (6)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dmo A   1 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREANIDGDGQVNYEEFVQMMTAK 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        


Chain A from PDB  Type:PROTEIN  Length:148
 aligned with CAM2B_XENLA | P0DP35 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:148
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141        
          CAM2B_XENLA     2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1dmoa_ A: Calmodulin                                                                                                                                SCOP domains
               CATH domains 1dmoA00 A:1-148 EF-hand                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh........eehhhhhhhhhhh.....hhhhhhhhhhh......ee.hhhhhhhhhhhh.....hhhhhhhhh.........eehhhhhhhhhhh.....hhhhhhhhhh.......ee.hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-78             -EF_HAND_2  PDB: A:80-115            EF_HAND_2  PDB: A:116-148         PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (5)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dmo A   1 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREANIDGDGQVNYEEFVQMMTAK 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DMO)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (CALM1_XENLA | P0DP33)

Chain A   (CAM2A_XENLA | P0DP34)

Chain A   (CAM2B_XENLA | P0DP35)

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  1dmo
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  CALM1_XENLA | P0DP33
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM1_XENLA | P0DP33: 1aji 1cfc 1cfd 1cff 1ckk 1cm1 1cm4 1deg 1f70 1f71 1iq5 1k90 1k93 1lvc 1mux 1nkf 1nwd 1qiv 1qiw 1sk6 1sy9 1up5 1x02 1y0v 2col 2i08 2k3s 2kdu 2llo 2llq 2mes 2rrt 3cln 4r8g 5t0x
        CAM2A_XENLA | P0DP34: 1aji 1cfc 1cfd 1cff 1ckk 1cm1 1cm4 1deg 1f70 1f71 1iq5 1k90 1k93 1lvc 1mux 1nkf 1nwd 1qiv 1qiw 1sk6 1sy9 1up5 1x02 1y0v 2col 2i08 2k3s 2kdu 2llo 2llq 2mes 2rrt 3cln 4r8g 5t0x
        CAM2B_XENLA | P0DP35: 1aji 1cfc 1cfd 1cff 1ckk 1cm1 1cm4 1deg 1f70 1f71 1iq5 1k90 1k93 1lvc 1mux 1nkf 1nwd 1qiv 1qiw 1sk6 1sy9 1up5 1x02 1y0v 2col 2i08 2k3s 2kdu 2llo 2llq 2mes 2rrt 3cln 4r8g 5t0x

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