4JLH - JenaLib

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Description

Title :   HIV-1 INTEGRASE CATALYTIC CORE DOMAIN A128T MUTANT COMPLEXED WITH ALLOSTERIC INHIBITOR

Authors :   L. Feng, M. Kvaratskhelia

Date :   12 Mar 13 (Deposition) - 01 May 13 (Release) - 19 Jun 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.09

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Integrase, Ccd, Dde Motif, Drug Resistance, A128T Mutation, Dimer Interface, Allosteric Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Feng, A. Sharma, A. Slaughter, N. Jena, Y. Koh, N. Shkriabai, R. C. Larue, P. A. Patel, H. Mitsuya, J. J. Kessl, A. Engelman, J. R. Fuchs, M. Kvaratskhelia
The A128T Resistance Mutation Reveals Aberrant Protein Multimerization As The Primary Mechanism Of Action Of Allosteric Hiv-1 Integrase Inhibitors.
J. Biol. Chem. V. 288 15813 2013
PubMed-ID: 23615903 | Reference-DOI: 10.1074/JBC.M112.443390

Compounds

Molecule 1 - HIV-1 INTEGRASE CATALYTIC CORE DOMAIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Common	:	HIV-1
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
	Organism Taxid	:	11698

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 4)

Asymmetric Unit (3, 4)

No.	Name	Count	Type	Full Name
1	0L9	1	Ligand/Ion	(2S)-[6-BROMO-4-(4-CHLOROPHENYL)-2-METHYLQUINOLIN-3-YL](METHOXY)ETHANOIC ACID
2	CAF	2	Mod. Amino Acid	S-DIMETHYLARSINOYL-CYSTEINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 8)

No.	Name	Count	Type	Full Name
1	0L9	2	Ligand/Ion	(2S)-[6-BROMO-4-(4-CHLOROPHENYL)-2-METHYLQUINOLIN-3-YL](METHOXY)ETHANOIC ACID
2	CAF	4	Mod. Amino Acid	S-DIMETHYLARSINOYL-CYSTEINE
3	SO4	2	Ligand/Ion	SULFATE ION

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:95 , THR A:125 , THR A:128 , ALA A:129 , TRP A:132 , GLN A:168 , ALA A:169 , GLU A:170 , HIS A:171 , THR A:174 , HOH A:418	BINDING SITE FOR RESIDUE 0L9 A 301
2	AC2	SOFTWARE	CAF A:65 , THR A:66 , HIS A:67	BINDING SITE FOR RESIDUE SO4 A 302

SS Bonds (0, 0)

(no "SS Bond" information available for 4JLH)

Cis Peptide Bonds (1, 1)

Asymmetric Unit

No.	Residues
1	Glu A:152	-	Ser A:153

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 4JLH)

PROSITE Motifs (0, 0)

(no "PROSITE Motif" information available for 4JLH)

Exons (0, 0)

(no "Exon" information available for 4JLH)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4jlha_ A: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee..eeeeeeee.....eeeeee...hhhhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhee...eehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jlh A  56 CSPGIWQLDcTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKTAcWWAGIKQEFESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGGYSAGERIVDIIATDIQ 209
                                    65        75        85        95       105       115       125    |  135   ||  157       167       177       187  ||   199       209
                                    65-CAF                                                          130-CAF  139|                                   190|                
                                                                                                              152                                    193

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Ribonuclease H-like (775)

Family: Retroviral integrase, catalytic domain (152)

Protein domain: automated matches (90)

Human immunodeficiency virus type 1 [TaxId: 11698] (4)

d4jlha_

CATH Domains (0, 0)

(no "CATH Domain" information available for 4JLH)

Pfam Domains (0, 0)

(no "Pfam Domain" information available for 4JLH)

Gene Ontology (48, 48)

Asymmetric Unit(hide GO term definitions)

Visualization

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	Ligands, Modified Residues, Ions
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:152 - Ser A:153	[ RasMol ]

Biological Unit
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		Biological Unit 1	[ Jena3D ]

Still Images

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	4jlh
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	POL_HV1N5 \| P12497
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
	POL_HV1N5 \| P12497	:	1a43 1a8o 1afv 1ak4 1aum 1b92 1b9d 1b9f 1baj 1bhl 1bi4 1bis 1biu 1biz 1bl3 1gwp 1hiw 1hyv 1hyz 1itg 1k6y 1m9d 1qs4 1uph 1wjb 1wjd 1wkn 1za9 2b4j 2gol 2gon 2h3f 2h3i 2h3q 2h3v 2h3z 2hmx 2hvp 2itg 2jpr 2jyg 2jyl 2lf4 2lya 2lyb 2m3z 2m8l 2m8n 2m8p 2ont 2pwm 2pwo 2pxr 2x2d 2xde 2xv6 2xxm 3av9 3ava 3avb 3avc 3avf 3avg 3avh 3avi 3avj 3avk 3avl 3avm 3avn 3dik 3dph 3ds0 3ds1 3ds2 3ds3 3ds4 3ds5 3dtj 3gv2 3h47 3h4e 3l3u 3l3v 3lpt 3lpu 3lry 3mge 3nf6 3nf7 3nf8 3nf9 3nfa 3p05 3p0a 3s85 3wne 3wnf 3wng 3wnh 4ah9 4ahr 4ahs 4aht 4ahu 4ahv 4coc 4cop 4dga 4dge 4dmn 4e1m 4e1n 4e91 4e92 4gvm 4gw6 4id1 4ipy 4jmu 4lqw 4nx4 4o0j 4o55 4o5b 4phv 4qnb 4wym 4zhr 5hvp 9hvp

Related Entries Specified in the PDB File

1itg	HIV-1 INTEGRASE CATALYTIC CORE DOMAIN STRUCTURE