1Y1D - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH IODODIFLUNISAL

Authors :   L. Gales, S. Macedo-Ribeiro, G. Arsequell, G. Valencia, M. J. Saraiva,

Date :   18 Nov 04 (Deposition) - 26 Jul 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Transthyretin, Amyloid, Iododiflunisal, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Gales, S. Macedo-Ribeiro, G. Arsequell, G. Valencia, M. J. Saraiva A. M. Damas
Human Transthyretin In Complex With Iododiflunisal: Structural Features Associated With A Potent Amyloid Inhibitor.
Biochem. J. V. 388 615 2005
PubMed-ID: 15689188 | Reference-DOI: 10.1042/BJ20042035

Molecule 1 - TRANSTHYRETIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PHNTR
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	TTR, PALB
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PREALBUMIN, TBPA, TTR, ATTR

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	FHI	2	Ligand/Ion	2',4'-DIFLUORO-4-HYDROXY-5-IODO-1,1'-BIPHENYL-3-CARBOXYLIC ACID

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	FHI	4	Ligand/Ion	2',4'-DIFLUORO-4-HYDROXY-5-IODO-1,1'-BIPHENYL-3-CARBOXYLIC ACID

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:15 , LEU A:17 , ALA A:108 , LEU A:110 , SER A:117 , THR A:119 , VAL A:121 , HOH A:5001	BINDING SITE FOR RESIDUE FHI A 2000
2	AC2	SOFTWARE	LYS B:1015 , LEU B:1017 , ALA B:1108 , LEU B:1110 , SER B:1117 , THR B:1119 , VAL B:1121 , HOH B:5157	BINDING SITE FOR RESIDUE FHI B 3000

(no "SS Bond" information available for 1Y1D)

(no "Cis Peptide Bond" information available for 1Y1D)

Asymmetric Unit (86, 172)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_007547	C	30	R	TTHY_HUMAN	Disease (AMYL-TTR)	121918083	A B	C	10 1010	R
02	UniProt	VAR_038959	L	32	P	TTHY_HUMAN	Disease (AMYL-TTR)	121918094	A B	L	12 1012	P
03	UniProt	VAR_038960	M	33	I	TTHY_HUMAN	Polymorphism	---	A B	M	13 1013	I
04	UniProt	VAR_007548	D	38	E	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	D	18 1018	E
05	UniProt	VAR_007549	D	38	G	TTHY_HUMAN	Disease (AMYL-TTR)	121918098	A B	D	18 1018	G
06	UniProt	VAR_007550	V	40	I	TTHY_HUMAN	Disease (AMYL-TTR)	121918093	A B	V	20 1020	I
07	UniProt	VAR_038961	S	43	N	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	S	23 1023	N
08	UniProt	VAR_007551	P	44	S	TTHY_HUMAN	Disease (AMYL-TTR)	11541790	A B	P	24 1024	S
09	UniProt	VAR_010658	V	48	M	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	V	28 1028	M
10	UniProt	VAR_007552	V	50	A	TTHY_HUMAN	Disease (AMYL-TTR)	79977247	A B	V	30 1030	A
11	UniProt	VAR_038962	V	50	G	TTHY_HUMAN	Disease (AMYL-TTR)	79977247	A B	V	30 1030	G
12	UniProt	VAR_007553	V	50	L	TTHY_HUMAN	Disease (AMYL-TTR)	28933979	A B	V	30 1030	L
13	UniProt	VAR_007554	V	50	M	TTHY_HUMAN	Disease (AMYL-TTR)	28933979	A B	V	30 1030	M
14	UniProt	VAR_038963	F	53	C	TTHY_HUMAN	Unclassified	---	A B	F	33 1033	C
15	UniProt	VAR_007555	F	53	I	TTHY_HUMAN	Disease (AMYL-TTR)	121918068	A B	F	33 1033	I
16	UniProt	VAR_007556	F	53	L	TTHY_HUMAN	Disease (AMYL-TTR)	121918068	A B	F	33 1033	L
17	UniProt	VAR_038964	F	53	V	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	F	33 1033	V
18	UniProt	VAR_038965	R	54	T	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	R	34 1034	T
19	UniProt	VAR_038966	K	55	N	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	K	35 1035	N
20	UniProt	VAR_007557	A	56	P	TTHY_HUMAN	Disease (AMYL-TTR)	121918077	A B	A	36 1036	P
21	UniProt	VAR_038967	D	58	A	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	D	38 1038	A
22	UniProt	VAR_038968	D	58	V	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	D	38 1038	V
23	UniProt	VAR_038969	W	61	L	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	W	41 1041	L
24	UniProt	VAR_038970	E	62	D	TTHY_HUMAN	Disease (AMYL-TTR)	11541796	A B	E	42 1042	D
25	UniProt	VAR_007558	E	62	G	TTHY_HUMAN	Disease (AMYL-TTR)	11541796	A B	E	42 1042	G
26	UniProt	VAR_038971	F	64	S	TTHY_HUMAN	Disease (AMYL-TTR)	104894665	A B	F	44 1044	S
27	UniProt	VAR_007559	A	65	D	TTHY_HUMAN	Disease (AMYL-TTR)	730881169	A B	A	45 1045	D
28	UniProt	VAR_038972	A	65	S	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	A	45 1045	S
29	UniProt	VAR_007560	A	65	T	TTHY_HUMAN	Disease (AMYL-TTR)	121918078	A B	A	45 1045	T
30	UniProt	VAR_007561	G	67	A	TTHY_HUMAN	Disease (AMYL-TTR)	121918090	A B	G	47 1047	A
31	UniProt	VAR_038973	G	67	E	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	G	47 1047	E
32	UniProt	VAR_007562	G	67	R	TTHY_HUMAN	Disease (AMYL-TTR)	387906523	A B	G	47 1047	R
33	UniProt	VAR_007563	G	67	V	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	G	47 1047	V
34	UniProt	VAR_007564	T	69	A	TTHY_HUMAN	Disease (AMYL-TTR)	121918081	A B	T	49 1049	A
35	UniProt	VAR_038974	T	69	I	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	T	49 1049	I
36	UniProt	VAR_007565	S	70	I	TTHY_HUMAN	Disease (AMYL-TTR)	121918080	A B	S	50 1050	I
37	UniProt	VAR_007566	S	70	R	TTHY_HUMAN	Disease (AMYL-TTR)	386134269	A B	S	50 1050	R
38	UniProt	VAR_007567	S	72	P	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	S	52 1052	P
39	UniProt	VAR_038975	G	73	E	TTHY_HUMAN	Disease (AMYL-TTR)	121918097	A B	G	53 1053	E
40	UniProt	VAR_007568	E	74	G	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	E	54 1054	G
41	UniProt	VAR_038976	E	74	K	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	E	54 1054	K
42	UniProt	VAR_007569	L	75	P	TTHY_HUMAN	Disease (AMYL-TTR)	121918079	A B	L	55 1055	P
43	UniProt	VAR_038977	L	75	Q	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	L	55 1055	Q
44	UniProt	VAR_007570	L	78	H	TTHY_HUMAN	Disease (AMYL-TTR)	121918069	A B	L	58 1058	H
45	UniProt	VAR_007571	L	78	R	TTHY_HUMAN	Disease (AMYL-TTR)	121918069	A B	L	58 1058	R
46	UniProt	VAR_007572	T	79	K	TTHY_HUMAN	Disease (AMYL-TTR)	730881163	A B	T	59 1059	K
47	UniProt	VAR_007573	T	80	A	TTHY_HUMAN	Disease (AMYL-TTR)	121918070	A B	T	60 1060	A
48	UniProt	VAR_038978	E	81	G	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	E	61 1061	G
49	UniProt	VAR_007574	E	81	K	TTHY_HUMAN	Disease (AMYL-TTR)	121918086	A B	E	61 1061	K
50	UniProt	VAR_007575	F	84	L	TTHY_HUMAN	Disease (AMYL-TTR)	121918091	A B	F	64 1064	L
51	UniProt	VAR_007576	I	88	L	TTHY_HUMAN	Disease (AMYL-TTR)	121918085	A B	I	68 1068	L
52	UniProt	VAR_007577	Y	89	H	TTHY_HUMAN	Disease (AMYL-TTR)	121918100	A B	Y	69 1069	H
53	UniProt	VAR_007578	K	90	N	TTHY_HUMAN	Disease (AMYL-TTR)	267607160	A B	K	70 1070	N
54	UniProt	VAR_007579	V	91	A	TTHY_HUMAN	Disease (AMYL-TTR)	121918084	A B	V	71 1071	A
55	UniProt	VAR_007580	I	93	V	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	I	73 1073	V
56	UniProt	VAR_007581	D	94	H	TTHY_HUMAN	Polymorphism	730881164	A B	D	74 1074	H
57	UniProt	VAR_007582	S	97	Y	TTHY_HUMAN	Disease (AMYL-TTR)	121918071	A B	S	77 1077	Y
58	UniProt	VAR_038979	Y	98	F	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	Y	78 1078	F
59	UniProt	VAR_007583	I	104	N	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	I	84 1084	N
60	UniProt	VAR_007584	I	104	S	TTHY_HUMAN	Disease (AMYL-TTR)	121918072	A B	I	84 1084	S
61	UniProt	VAR_038980	I	104	T	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	I	84 1084	T
62	UniProt	VAR_010659	E	109	K	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	E	89 1089	K
63	UniProt	VAR_007585	E	109	Q	TTHY_HUMAN	Disease (AMYL-TTR)	121918082	A B	E	89 1089	Q
64	UniProt	VAR_007586	H	110	N	TTHY_HUMAN	Polymorphism	121918074	A B	H	90 1090	N
65	UniProt	VAR_007587	A	111	S	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	A	91 1091	S
66	UniProt	VAR_038981	V	114	A	TTHY_HUMAN	Unclassified	---	A B	V	94 1094	A
67	UniProt	VAR_007588	A	117	G	TTHY_HUMAN	Disease (AMYL-TTR)	121918087	A B	A	97 1097	G
68	UniProt	VAR_038982	A	117	S	TTHY_HUMAN	Disease (AMYL-TTR)	267607161	A B	A	97 1097	S
69	UniProt	VAR_007589	G	121	S	TTHY_HUMAN	Polymorphism	755337715	A B	G	101 1101	S
70	UniProt	VAR_007590	P	122	R	TTHY_HUMAN	Polymorphism	---	A B	P	102 1102	R
71	UniProt	VAR_007591	R	124	C	TTHY_HUMAN	Polymorphism	745834030	A B	R	104 1104	C
72	UniProt	VAR_038983	R	124	H	TTHY_HUMAN	Polymorphism	121918095	A B	R	104 1104	H
73	UniProt	VAR_038984	T	126	N	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	T	106 1106	N
74	UniProt	VAR_038985	I	127	M	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	I	107 1107	M
75	UniProt	VAR_007592	I	127	V	TTHY_HUMAN	Disease (AMYL-TTR)	121918089	A B	I	107 1107	V
76	UniProt	VAR_007593	A	129	T	TTHY_HUMAN	Disease (DTTRH)	267607159	A B	A	109 1109	T
77	UniProt	VAR_007594	L	131	M	TTHY_HUMAN	Disease (AMYL-TTR)	121918073	A B	L	111 1111	M
78	UniProt	VAR_007595	Y	134	C	TTHY_HUMAN	Disease (AMYL-TTR)	121918075	A B	Y	114 1114	C
79	UniProt	VAR_007598	Y	134	H	TTHY_HUMAN	Disease (CTS1)	121918088	A B	Y	114 1114	H
80	UniProt	VAR_007596	Y	136	S	TTHY_HUMAN	Disease (AMYL-TTR)	730881167	A B	Y	116 1116	S
81	UniProt	VAR_007597	Y	136	V	TTHY_HUMAN	Unclassified	---	A B	Y	116 1116	V
82	UniProt	VAR_007599	T	139	M	TTHY_HUMAN	Polymorphism	28933981	A B	T	119 1119	M
83	UniProt	VAR_038986	A	140	S	TTHY_HUMAN	Disease (AMYL-TTR)	876658108	A B	A	120 1120	S
84	UniProt	VAR_038987	V	142	A	TTHY_HUMAN	Disease (AMYL-TTR)	---	A B	V	122 1122	A
85	UniProt	VAR_007600	V	142	I	TTHY_HUMAN	Disease (AMYL-TTR)	28933980	A B	V	122 1122	I
86	UniProt	VAR_038988	N	144	S	TTHY_HUMAN	Disease (AMYL-TTR)	144965179	A B	N	124 1124	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (86, 344)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_007547	C	30	R	TTHY_HUMAN	Disease (AMYL-TTR)	121918083	A A/B	C	10 1010	R
02	UniProt	VAR_038959	L	32	P	TTHY_HUMAN	Disease (AMYL-TTR)	121918094	A A/B	L	12 1012	P
03	UniProt	VAR_038960	M	33	I	TTHY_HUMAN	Polymorphism	---	A A/B	M	13 1013	I
04	UniProt	VAR_007548	D	38	E	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	D	18 1018	E
05	UniProt	VAR_007549	D	38	G	TTHY_HUMAN	Disease (AMYL-TTR)	121918098	A A/B	D	18 1018	G
06	UniProt	VAR_007550	V	40	I	TTHY_HUMAN	Disease (AMYL-TTR)	121918093	A A/B	V	20 1020	I
07	UniProt	VAR_038961	S	43	N	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	S	23 1023	N
08	UniProt	VAR_007551	P	44	S	TTHY_HUMAN	Disease (AMYL-TTR)	11541790	A A/B	P	24 1024	S
09	UniProt	VAR_010658	V	48	M	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	V	28 1028	M
10	UniProt	VAR_007552	V	50	A	TTHY_HUMAN	Disease (AMYL-TTR)	79977247	A A/B	V	30 1030	A
11	UniProt	VAR_038962	V	50	G	TTHY_HUMAN	Disease (AMYL-TTR)	79977247	A A/B	V	30 1030	G
12	UniProt	VAR_007553	V	50	L	TTHY_HUMAN	Disease (AMYL-TTR)	28933979	A A/B	V	30 1030	L
13	UniProt	VAR_007554	V	50	M	TTHY_HUMAN	Disease (AMYL-TTR)	28933979	A A/B	V	30 1030	M
14	UniProt	VAR_038963	F	53	C	TTHY_HUMAN	Unclassified	---	A A/B	F	33 1033	C
15	UniProt	VAR_007555	F	53	I	TTHY_HUMAN	Disease (AMYL-TTR)	121918068	A A/B	F	33 1033	I
16	UniProt	VAR_007556	F	53	L	TTHY_HUMAN	Disease (AMYL-TTR)	121918068	A A/B	F	33 1033	L
17	UniProt	VAR_038964	F	53	V	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	F	33 1033	V
18	UniProt	VAR_038965	R	54	T	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	R	34 1034	T
19	UniProt	VAR_038966	K	55	N	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	K	35 1035	N
20	UniProt	VAR_007557	A	56	P	TTHY_HUMAN	Disease (AMYL-TTR)	121918077	A A/B	A	36 1036	P
21	UniProt	VAR_038967	D	58	A	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	D	38 1038	A
22	UniProt	VAR_038968	D	58	V	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	D	38 1038	V
23	UniProt	VAR_038969	W	61	L	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	W	41 1041	L
24	UniProt	VAR_038970	E	62	D	TTHY_HUMAN	Disease (AMYL-TTR)	11541796	A A/B	E	42 1042	D
25	UniProt	VAR_007558	E	62	G	TTHY_HUMAN	Disease (AMYL-TTR)	11541796	A A/B	E	42 1042	G
26	UniProt	VAR_038971	F	64	S	TTHY_HUMAN	Disease (AMYL-TTR)	104894665	A A/B	F	44 1044	S
27	UniProt	VAR_007559	A	65	D	TTHY_HUMAN	Disease (AMYL-TTR)	730881169	A A/B	A	45 1045	D
28	UniProt	VAR_038972	A	65	S	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	A	45 1045	S
29	UniProt	VAR_007560	A	65	T	TTHY_HUMAN	Disease (AMYL-TTR)	121918078	A A/B	A	45 1045	T
30	UniProt	VAR_007561	G	67	A	TTHY_HUMAN	Disease (AMYL-TTR)	121918090	A A/B	G	47 1047	A
31	UniProt	VAR_038973	G	67	E	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	G	47 1047	E
32	UniProt	VAR_007562	G	67	R	TTHY_HUMAN	Disease (AMYL-TTR)	387906523	A A/B	G	47 1047	R
33	UniProt	VAR_007563	G	67	V	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	G	47 1047	V
34	UniProt	VAR_007564	T	69	A	TTHY_HUMAN	Disease (AMYL-TTR)	121918081	A A/B	T	49 1049	A
35	UniProt	VAR_038974	T	69	I	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	T	49 1049	I
36	UniProt	VAR_007565	S	70	I	TTHY_HUMAN	Disease (AMYL-TTR)	121918080	A A/B	S	50 1050	I
37	UniProt	VAR_007566	S	70	R	TTHY_HUMAN	Disease (AMYL-TTR)	386134269	A A/B	S	50 1050	R
38	UniProt	VAR_007567	S	72	P	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	S	52 1052	P
39	UniProt	VAR_038975	G	73	E	TTHY_HUMAN	Disease (AMYL-TTR)	121918097	A A/B	G	53 1053	E
40	UniProt	VAR_007568	E	74	G	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	E	54 1054	G
41	UniProt	VAR_038976	E	74	K	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	E	54 1054	K
42	UniProt	VAR_007569	L	75	P	TTHY_HUMAN	Disease (AMYL-TTR)	121918079	A A/B	L	55 1055	P
43	UniProt	VAR_038977	L	75	Q	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	L	55 1055	Q
44	UniProt	VAR_007570	L	78	H	TTHY_HUMAN	Disease (AMYL-TTR)	121918069	A A/B	L	58 1058	H
45	UniProt	VAR_007571	L	78	R	TTHY_HUMAN	Disease (AMYL-TTR)	121918069	A A/B	L	58 1058	R
46	UniProt	VAR_007572	T	79	K	TTHY_HUMAN	Disease (AMYL-TTR)	730881163	A A/B	T	59 1059	K
47	UniProt	VAR_007573	T	80	A	TTHY_HUMAN	Disease (AMYL-TTR)	121918070	A A/B	T	60 1060	A
48	UniProt	VAR_038978	E	81	G	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	E	61 1061	G
49	UniProt	VAR_007574	E	81	K	TTHY_HUMAN	Disease (AMYL-TTR)	121918086	A A/B	E	61 1061	K
50	UniProt	VAR_007575	F	84	L	TTHY_HUMAN	Disease (AMYL-TTR)	121918091	A A/B	F	64 1064	L
51	UniProt	VAR_007576	I	88	L	TTHY_HUMAN	Disease (AMYL-TTR)	121918085	A A/B	I	68 1068	L
52	UniProt	VAR_007577	Y	89	H	TTHY_HUMAN	Disease (AMYL-TTR)	121918100	A A/B	Y	69 1069	H
53	UniProt	VAR_007578	K	90	N	TTHY_HUMAN	Disease (AMYL-TTR)	267607160	A A/B	K	70 1070	N
54	UniProt	VAR_007579	V	91	A	TTHY_HUMAN	Disease (AMYL-TTR)	121918084	A A/B	V	71 1071	A
55	UniProt	VAR_007580	I	93	V	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	I	73 1073	V
56	UniProt	VAR_007581	D	94	H	TTHY_HUMAN	Polymorphism	730881164	A A/B	D	74 1074	H
57	UniProt	VAR_007582	S	97	Y	TTHY_HUMAN	Disease (AMYL-TTR)	121918071	A A/B	S	77 1077	Y
58	UniProt	VAR_038979	Y	98	F	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	Y	78 1078	F
59	UniProt	VAR_007583	I	104	N	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	I	84 1084	N
60	UniProt	VAR_007584	I	104	S	TTHY_HUMAN	Disease (AMYL-TTR)	121918072	A A/B	I	84 1084	S
61	UniProt	VAR_038980	I	104	T	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	I	84 1084	T
62	UniProt	VAR_010659	E	109	K	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	E	89 1089	K
63	UniProt	VAR_007585	E	109	Q	TTHY_HUMAN	Disease (AMYL-TTR)	121918082	A A/B	E	89 1089	Q
64	UniProt	VAR_007586	H	110	N	TTHY_HUMAN	Polymorphism	121918074	A A/B	H	90 1090	N
65	UniProt	VAR_007587	A	111	S	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	A	91 1091	S
66	UniProt	VAR_038981	V	114	A	TTHY_HUMAN	Unclassified	---	A A/B	V	94 1094	A
67	UniProt	VAR_007588	A	117	G	TTHY_HUMAN	Disease (AMYL-TTR)	121918087	A A/B	A	97 1097	G
68	UniProt	VAR_038982	A	117	S	TTHY_HUMAN	Disease (AMYL-TTR)	267607161	A A/B	A	97 1097	S
69	UniProt	VAR_007589	G	121	S	TTHY_HUMAN	Polymorphism	755337715	A A/B	G	101 1101	S
70	UniProt	VAR_007590	P	122	R	TTHY_HUMAN	Polymorphism	---	A A/B	P	102 1102	R
71	UniProt	VAR_007591	R	124	C	TTHY_HUMAN	Polymorphism	745834030	A A/B	R	104 1104	C
72	UniProt	VAR_038983	R	124	H	TTHY_HUMAN	Polymorphism	121918095	A A/B	R	104 1104	H
73	UniProt	VAR_038984	T	126	N	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	T	106 1106	N
74	UniProt	VAR_038985	I	127	M	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	I	107 1107	M
75	UniProt	VAR_007592	I	127	V	TTHY_HUMAN	Disease (AMYL-TTR)	121918089	A A/B	I	107 1107	V
76	UniProt	VAR_007593	A	129	T	TTHY_HUMAN	Disease (DTTRH)	267607159	A A/B	A	109 1109	T
77	UniProt	VAR_007594	L	131	M	TTHY_HUMAN	Disease (AMYL-TTR)	121918073	A A/B	L	111 1111	M
78	UniProt	VAR_007595	Y	134	C	TTHY_HUMAN	Disease (AMYL-TTR)	121918075	A A/B	Y	114 1114	C
79	UniProt	VAR_007598	Y	134	H	TTHY_HUMAN	Disease (CTS1)	121918088	A A/B	Y	114 1114	H
80	UniProt	VAR_007596	Y	136	S	TTHY_HUMAN	Disease (AMYL-TTR)	730881167	A A/B	Y	116 1116	S
81	UniProt	VAR_007597	Y	136	V	TTHY_HUMAN	Unclassified	---	A A/B	Y	116 1116	V
82	UniProt	VAR_007599	T	139	M	TTHY_HUMAN	Polymorphism	28933981	A A/B	T	119 1119	M
83	UniProt	VAR_038986	A	140	S	TTHY_HUMAN	Disease (AMYL-TTR)	876658108	A A/B	A	120 1120	S
84	UniProt	VAR_038987	V	142	A	TTHY_HUMAN	Disease (AMYL-TTR)	---	A A/B	V	122 1122	A
85	UniProt	VAR_007600	V	142	I	TTHY_HUMAN	Disease (AMYL-TTR)	28933980	A A/B	V	122 1122	I
86	UniProt	VAR_038988	N	144	S	TTHY_HUMAN	Disease (AMYL-TTR)	144965179	A A/B	N	124 1124	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSTHYRETIN_1	PS00768	Transthyretin signature 1.	TTHY_HUMAN	35-50	2	A:15-30 B:1015-1030
2	TRANSTHYRETIN_2	PS00769	Transthyretin signature 2.	TTHY_HUMAN	125-137	2	A:105-117 B:1105-1117

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSTHYRETIN_1	PS00768	Transthyretin signature 1.	TTHY_HUMAN	35-50	4	A:15-30 B:1015-1030
2	TRANSTHYRETIN_2	PS00769	Transthyretin signature 2.	TTHY_HUMAN	125-137	4	A:105-117 B:1105-1117

Asymmetric Unit (3, 6)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000237014	1a	ENSE00001836564	chr18:29171689-29171934	246	TTHY_HUMAN	1-23	23	0	-	-
1.2	ENST00000237014	2	ENSE00000796938	chr18:29172859-29172989	131	TTHY_HUMAN	24-67	44	2	A:10-47 B:1010-1047	38 38
1.3a	ENST00000237014	3a	ENSE00000796939	chr18:29175083-29175218	136	TTHY_HUMAN	67-112	46	2	A:47-92 B:1047-1092	46 46
1.8a	ENST00000237014	8a	ENSE00001827041	chr18:29178531-29178974	444	TTHY_HUMAN	113-147	35	2	A:93-124 B:1093-1125	32 33

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:115
 aligned with TTHY_HUMAN | P02766 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    39        49        59        69        79        89        99       109       119       129       139     
          TTHY_HUMAN     30 CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTN  144
               SCOP domains d1y1da_ A: Transthyretin (synonym: prealbumin)                                                                      SCOP domains
               CATH domains 1y1dA00 A:10-124  [code=2.60.40.180, no name defined]                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh.....eeeeeeeeee......eeeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:10-47 UniProt: 24-67 ---------------------------------------------Exon 1.8a  PDB: A:93-124         Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.3a  PDB: A:47-92 UniProt: 67-112       -------------------------------- Transcript 1 (2)
                1y1d A   10 CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTN  124
                                    19        29        39        49        59        69        79        89        99       109       119

Chain B from PDB  Type:PROTEIN  Length:116
 aligned with TTHY_HUMAN | P02766 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:116
                                    39        49        59        69        79        89        99       109       119       129       139      
          TTHY_HUMAN     30 CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNP  145
               SCOP domains d1y1db_ B: Transthyretin (synonym: prealbumin)                                                                       SCOP domains
               CATH domains 1y1dB00 B:1010-1125  [code=2.60.40.180, no name defined]                                                             CATH domains
           Pfam domains (1) Transthyretin-1y1dB01 B:1010-1121                                                                               ---- Pfam domains (1)
           Pfam domains (2) Transthyretin-1y1dB02 B:1010-1121                                                                               ---- Pfam domains (2)
         Sec.struct. author ..eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh.....eeeeeeeeee......eeeeeeeee..eeeeeeeee.. Sec.struct. author
             SAPs(SNPs) (1) R-PI----E-I--NS---M-A--CTNP-A--LD-SD-A-AI-PEGP--HKAG--L---LHNA-VH--YF-----N----KNS--A--G---SR-C-NM-T-M--C-S--MS-A-S- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------G-----------G--I----V---G--S-E-IR---KQ--R--K----------------------S----Q-------S------H--V------H-V-----I--- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------------L--L-----------T-R------------------------------------T----------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) --------------------M--V-------------V------------------------------------------------------------------------------ SAPs(SNPs) (4)
                    PROSITE -----TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN-------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:1010-1047            ---------------------------------------------Exon 1.8a  PDB: B:1093-1125       Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.3a  PDB: B:1047-1092 UniProt: 67-112   --------------------------------- Transcript 1 (2)
                1y1d B 1010 CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNP 1125
                                  1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Prealbumin-like (433)

Superfamily: Transthyretin (synonym: prealbumin) (211)

Family: Transthyretin (synonym: prealbumin) (198)

Protein domain: Transthyretin (synonym: prealbumin) (194)

Human (Homo sapiens) [TaxId: 9606] (184)

1a	d1y1da_	A:
1b	d1y1db_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: [code=2.60.40.180, no name defined] (150)

Human (Homo sapiens) (131)

1a	1y1dB00	B:1010-1125
1b	1y1dA00	A:10-124

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Transthyretin (88)

Family: Transthyretin (45)

Homo sapiens (Human) (36)

1a	Transthyretin-1y1dB01	B:1010-1121
1b	Transthyretin-1y1dB02	B:1010-1121

Asymmetric Unit(hide GO term definitions)

Chain A,B (TTHY_HUMAN | P02766)

molecular function
	GO:0005179	hormone activity	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
	GO:0042562	hormone binding	Interacting selectively and non-covalently with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0044267	cellular protein metabolic process	The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
	GO:0030198	extracellular matrix organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
	GO:0001523	retinoid metabolic process	The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
	GO:0042572	retinol metabolic process	The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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