Chain A from PDB Type:PROTEIN Length:114
aligned with SAV_STRAV | P22629 from UniProtKB/Swiss-Prot Length:183
Alignment length:120
49 59 69 79 89 99 109 119 129 139 149 159
SAV_STRAV 40 GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKP 159
SCOP domains d1swha_ A: Streptavidin SCOP domains
CATH domains 1swhA00 A:16-135 [code=2.40.1 28.30, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeee.....eeeeee....eeeeeee.------..eeeeeee..........eeeeeeee.........eeeeeeeeee.....eeeeeeeeee...hhhhhh.eeeeeeeee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------AVIDIN_1 --- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
1swh A 16 GITGTWYNQLGSTFIVTAGADGALTGTYES------SRYVLTGRYDSAPATDGSGTALGWTVAFKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKP 135
25 35 45 | 55 65 75 85 95 105 115 125 135
45 52
Chain B from PDB Type:PROTEIN Length:115
aligned with SAV_STRAV | P22629 from UniProtKB/Swiss-Prot Length:183
Alignment length:118
49 59 69 79 89 99 109 119 129 139 149
SAV_STRAV 40 GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV 157
SCOP domains d1swhb_ B: Streptavidin SCOP domains
CATH domains 1swhB00 B:16-133 [code=2.40.1 28.30, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeee.....eeeeee....eeeeeee.---.hhh.eeeeeee..........eeeeeeee.........eeeeeeeeee.....eeeeeeeeee...hhhhhh.eeeeeeeee.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------AVIDIN_1 - PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
1swh B 16 GITGTWYNQLGSTFIVTAGADGALTGTYES---NAESRYVLTGRYDSAPATDGSGTALGWTVAFKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV 133
25 35 45 | 55 65 75 85 95 105 115 125
45 49
Chain C from PDB Type:PROTEIN Length:115
aligned with SAV_STRAV | P22629 from UniProtKB/Swiss-Prot Length:183
Alignment length:118
49 59 69 79 89 99 109 119 129 139 149
SAV_STRAV 40 GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV 157
SCOP domains d1swhc_ C: Streptavidin SCOP domains
CATH domains 1swhC00 C:16-133 [code=2.40.1 28.30, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeee.....eeeeee....eeeeeee.---.hhheeeeeeee..........eeeeeeee.........eeeeeeeeee.....eeeeeeeeee...hhhhhh.eeeeeeeee.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------AVIDIN_1 - PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
1swh C 16 GITGTWYNQLGSTFIVTAGADGALTGTYES---NAESRYVLTGRYDSAPATDGSGTALGWTVAFKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV 133
25 35 45 | 55 65 75 85 95 105 115 125
45 49
Chain D from PDB Type:PROTEIN Length:115
aligned with SAV_STRAV | P22629 from UniProtKB/Swiss-Prot Length:183
Alignment length:118
49 59 69 79 89 99 109 119 129 139 149
SAV_STRAV 40 GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV 157
SCOP domains d1swhd_ D: Streptavidin SCOP domains
CATH domains 1swhD00 D:16-133 [code=2.40.1 28.30, no name defined] CATH domains
Pfam domains (1) Avidin-1swhD01 D:16-132 - Pfam domains (1)
Pfam domains (2) Avidin-1swhD02 D:16-132 - Pfam domains (2)
Pfam domains (3) Avidin-1swhD03 D:16-132 - Pfam domains (3)
Pfam domains (4) Avidin-1swhD04 D:16-132 - Pfam domains (4)
Sec.struct. author ...eeee.....eeeeee....eeeeeee.---.hhheeeeeeee..........eeeeeeee.........eeeeeeeeee.....eeeeeeeeee...hhhhhh.eeeeeeeee.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------AVIDIN_1 - PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
1swh D 16 GITGTWYNQLGSTFIVTAGADGALTGTYES---NAESRYVLTGRYDSAPATDGSGTALGWTVAFKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV 133
25 35 45 | 55 65 75 85 95 105 115 125
45 49
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |