Chain A from PDB Type:PROTEIN Length:116
aligned with SAV_STRAV | P22629 from UniProtKB/Swiss-Prot Length:183
Alignment length:117
171
168 | 178
167 | | 172 177 | 183
85 95 105 115 125 135 145 155 165 | | | - | | -| |
SAV_STRAV 76 SRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASIDAA--KKAG----VNNGNP--LDAVQQ- -
SCOP domains d1swfa_ A: Streptavidin SCOP domains
CATH domains 1swfA00 A:52-45 [code=2.40.128.30, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeee..........eeeeeeee.........eeeeeeeeee.....eeeeeeeeee...hhhhhh.eeeeeeeeee..-hhhhh.eeeee....eeeeee....eeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------AVIDIN_1 ------------------------------------ PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
1swf A 52 SRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVS-AEAGITGTWYNQLGSTFIVTAGADGALTGTYES 45
61 71 81 91 101 111 121 131 || | 18 28 38
133| |
143 |
13
Chain B from PDB Type:PROTEIN Length:125
aligned with SAV_STRAV | P22629 from UniProtKB/Swiss-Prot Length:183
Alignment length:125
173 174 183
85 95 105 115 125 135 145 155 165 | - - | 179 |
SAV_STRAV 76 SRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASIDAAKKAGVN----------------NGNPLDAVQQ- -
SCOP domains d1swfb_ B: Streptavidin SCOP domains
CATH domains 1swfB00 B:52-45 [code=2.40.128.30, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeee..........eeeeeeee.........eeeeeeeeee.....eeeeeeeeee...hhhhhh.eeeeeeeeee....hhh..........eeeee....eeeeee....eeeeeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------AVIDIN_1 -------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
1swf B 52 SRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASGGGSAEAGITGTWYNQLGSTFIVTAGADGALTGTYES 45
61 71 81 91 101 111 121 131 141 || 20 30 40
143|
13
Chain C from PDB Type:PROTEIN Length:125
aligned with SAV_STRAV | P22629 from UniProtKB/Swiss-Prot Length:183
Alignment length:125
173 174 183
85 95 105 115 125 135 145 155 165 | - - | 179 |
SAV_STRAV 76 SRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASIDAAKKAGVN----------------NGNPLDAVQQ- -
SCOP domains d1swfc_ C: Streptavidin SCOP domains
CATH domains 1swfC00 C:52-45 [code=2.40.128.30, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeee..........eeeeeeee.........eeeeeeeeee.....eeeeeeeeee...hhhhhh.eeeeeeeeee....hhh..........eeeee....eeeeee....eeeeeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------AVIDIN_1 -------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
1swf C 52 SRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASGGGSAEAGITGTWYNQLGSTFIVTAGADGALTGTYES 45
61 71 81 91 101 111 121 131 141 || 20 30 40
143|
13
Chain D from PDB Type:PROTEIN Length:116
aligned with SAV_STRAV | P22629 from UniProtKB/Swiss-Prot Length:183
Alignment length:117
171
168 | 178
167 | | 172 177 | 183
85 95 105 115 125 135 145 155 165 | | | - | | -| |
SAV_STRAV 76 SRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASIDAA--KKAG----VNNGNP--LDAVQQ- -
SCOP domains d1swfd_ D: Streptavidin SCOP domains
CATH domains 1swfD00 D:52-45 [code=2.40.128.30, no name defined] CATH domains
Pfam domains (1) Avidin-1swfD01 D:52-132 ------------------------------------ Pfam domains (1)
Pfam domains (2) Avidin-1swfD02 D:52-132 ------------------------------------ Pfam domains (2)
Pfam domains (3) Avidin-1swfD03 D:52-132 ------------------------------------ Pfam domains (3)
Pfam domains (4) Avidin-1swfD04 D:52-132 ------------------------------------ Pfam domains (4)
Sec.struct. author .eeeeeeee..........eeeeeeee.........eeeeeeeeee.....eeeeeeeeee......hhh.eeeeeeeeee..-hhhhh.eeeee....eeeeee....eeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------AVIDIN_1 ------------------------------------ PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
1swf D 52 SRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVS-AEAGITGTWYNQLGSTFIVTAGADGALTGTYES 45
61 71 81 91 101 111 121 131 || | 18 28 38
133| |
143 |
13
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |