Chain A from PDB Type:PROTEIN Length:234
aligned with LEP_ECOLI | P00803 from UniProtKB/Swiss-Prot Length:324
Alignment length:248
86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316
LEP_ECOLI 77 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 324
SCOP domains d1kn9a_ A: Type 1 signal peptidase SCOP domains
CATH domains 1kn9A01 A:76-153,A:263-323 Umud Fragment, subunit A 1kn9A02 A:154-188,A :224-262 -----------------------------------1kn9A02 A:154-188,A:224-262 1kn9A01 A:76-153,A:263-323 Umud Fragment, subunit A CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee..eeeee.............eeeeeee.eeee........eeee.......eeeee.......eeeeeeee....eeeee....eeeee.....-----....eee...eeeeeeeeeehhhhh.eeeeeee.........eeeeeeeeeee..eeeeeee......hhhhh.........eee....eeeee........hhhhhh.ee...eeeeeeeeeee..---------.hhhhh.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------SPASE_I_-------------------------------------------------SPASE_I_2 --------------------------------------------------------------------------------------------------------------SPASE_I_3 ------------------------------------------ PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1kn9 A 76 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSS-----NALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD---------LRLSRIGGIH 323
85 95 105 115 125 135 145 155 165 | - | 185 195 205 215 225 235 245 255 265 275 285 295 |- 315
172 178 304 314
Chain B from PDB Type:PROTEIN Length:222
aligned with LEP_ECOLI | P00803 from UniProtKB/Swiss-Prot Length:324
Alignment length:246
88 98 108 118 128 138 148 158 168 178 188 198 208 218 228 238 248 258 268 278 288 298 308 318
LEP_ECOLI 79 SFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 324
SCOP domains d1kn9b_ B: Type 1 signal pepti dase SCOP domains
CATH domains 1kn9B01 B:78-153,B:263-319 Umu d Fragment, subunit A 1kn9B02 B:154-188,B:224-262 -----------------------------------1kn9B02 B:154-188,B:224-262 1kn9B01 B:78-153,B:263-319 Umud Fragment, subunit---- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.................eeeeeee..----------------......eeeee.......eeeeeeee....eeeee....eeeee..............eee...eeeeeeeeee.......eeeeee..........eeeeeeeeee..eeeeeee......hhhhh.........eee....eeeee........hhhhhh.ee...eeeeeeeeeee..--------..hhhhhee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ----------SPASE_I_-------------------------------------------------SPASE_I_2 --------------------------------------------------------------------------------------------------------------SPASE_I_3 ------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1kn9 B 78 SFIYEPFQIPSGSMMPTLLIGDFILVEKFA----------------HPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD--------GLRLSRIGGIH 323
87 97 107 - |127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 | - | 317
107 124 304 313
Chain C from PDB Type:PROTEIN Length:234
aligned with LEP_ECOLI | P00803 from UniProtKB/Swiss-Prot Length:324
Alignment length:248
86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316
LEP_ECOLI 77 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 324
SCOP domains d1kn9c_ C: Type 1 signal peptidase SCOP domains
CATH domains 1kn9C01 C:76-153,C:263-323 Umud Fragment, subunit A 1kn9C02 C:154-188,C :224-262 -----------------------------------1kn9C02 C:154-188,C:224-262 1kn9C01 C:76-153,C:263-323 Umud Fragment, subunit A CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....eeeee.............eeeeeee.eeeee......eeeee.......eeeee.......eeeeeeee....eeeee....eeeee.....-----....eee...eeeeeeee...........eeee.........eeeeeeeeeee..eeeeeee......hhhhh.........eee....eeeee........hhhhhh.ee...eeeeeeeeeee..---------.hhhhh.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------SPASE_I_-------------------------------------------------SPASE_I_2 --------------------------------------------------------------------------------------------------------------SPASE_I_3 ------------------------------------------ PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1kn9 C 76 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSS-----NALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD---------LRLSRIGGIH 323
85 95 105 115 125 135 145 155 165 | - | 185 195 205 215 225 235 245 255 265 275 285 295 |- 315
172 178 304 314
Chain D from PDB Type:PROTEIN Length:214
aligned with LEP_ECOLI | P00803 from UniProtKB/Swiss-Prot Length:324
Alignment length:246
88 98 108 118 128 138 148 158 168 178 188 198 208 218 228 238 248 258 268 278 288 298 308 318
LEP_ECOLI 79 SFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 324
SCOP domains d1kn9d_ D: Type 1 signal pept idase SCOP domains
CATH domains 1kn9D01 D:78-153,D:263-319 Um ud Fragment , subunit A 1kn9D02 D:154-188,D:22 4-262 ----------- ---------------------1kn9D02 D:154-188,D:224-262 1kn9D01 D:78-153,D:263-319 Umud Fragment, subunit---- CATH domains
Pfam domains (1) -------Peptidase_S24-1kn9D01 D:85-169 ------ ---------------------- -----------------------------Peptidase_S26-1kn9D05 D:232-301 --- ----------- Pfam domains (1)
Pfam domains (2) -------Peptidase_S24-1kn9D02 D:85-169 ------ ---------------------- -----------------------------Peptidase_S26-1kn9D06 D:232-301 --- ----------- Pfam domains (2)
Pfam domains (3) -------Peptidase_S24-1kn9D03 D:85-169 ------ ---------------------- -----------------------------Peptidase_S26-1kn9D07 D:232-301 --- ----------- Pfam domains (3)
Pfam domains (4) -------Peptidase_S24-1kn9D04 D:85-169 ------ ---------------------- -----------------------------Peptidase_S26-1kn9D08 D:232-301 --- ----------- Pfam domains (4)
Sec.struct. author .eee.................eeeeee..------------------.....eeee..-......eeeeeee....eeeee....eeeee........--....eee...eeeeeeeeee..---..eeeeee..........eeeeeeeeee..eeeeeee......hhhhh.........eee....eeeee........hhhhhh.ee...eeeeeeeeeee..--------..hhhhhee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ----------SPASE_I_-------------------------------------------------SPASE_I_2 --------------------------------------------------------------------------------------------------------------SPASE_I_3 ------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1kn9 D 78 SFIYEPFQIPSGSMMPTLLIGDFILVEKF------------------PKRGDIVVFKY-EDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQA--NALPVTYSNVEPSDFVQTFSRR---EATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD--------GLRLSRIGGIH 323
87 97 |- - 127 137 147 157 167 | -| 187 197 | | 207 217 227 237 247 257 267 277 287 297 | - | 317
106 125 135 | 175 | 199 203 304 313
137 178
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |