Chain A from PDB Type:PROTEIN Length:239
aligned with LEP_ECOLI | P00803 from UniProtKB/Swiss-Prot Length:324
Alignment length:247
87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317
LEP_ECOLI 78 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 324
SCOP domains d1b12a_ A: Type 1 signal peptidase SCOP domains
CATH domains 1b12A01 A:77-153,A:263-323 Umud Fragment, subunit A 1b12A02 A:154-188,A:224-262 -----------------------------------1b12A02 A:154-188,A:224-262 1b12A01 A:77-153,A:263-323 Umud Fragment, subunit A CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeee.............eeeeeee.eeeee.hhhh.eeeee.......eeeee.......eeeeeeee....eeeee....eeeee..............eee...eeeeeeeeeehhhhh.eeeeeee.........eeeeeeeeeee..eeeeeee......hhhhh.........eee....eeeee........hhhhhh.ee...eeeeeeeeeee..--------..hhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------SPASE_I_-------------------------------------------------SPASE_I_2 --------------------------------------------------------------------------------------------------------------SPASE_I_3 ------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1b12 A 77 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD--------GLRLSRIGGIH 323
86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 | - |316
304 313
Chain B from PDB Type:PROTEIN Length:211
aligned with LEP_ECOLI | P00803 from UniProtKB/Swiss-Prot Length:324
Alignment length:245
89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319
LEP_ECOLI 80 FIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 324
SCOP domains d1b12b_ B: Type 1 signal pep tidase SCOP domains
CATH domains 1b12B01 B:79-153,B:263-319 U mud Fragment, subunit A 1b12B02 B:154-188 ,B:224-262 ---------- ---------------------1b12B02 B:154-188,B:224-262 1b12B01 B:79-153,B:263-319 Umud Fragment, subuni---- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.................eeeeeee.----------------.......eeeee.......eeeeeeee....eeeee....eeeee...-----......eee...eeeeeeeeee.----..eeeeee..........eeeeeeeeee..eeeeeee......hhhhh.........eee....eeeee........hhhhhh.ee...eeeeeeeeeee..---------.hhhhhee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------SPASE_I_-------------------------------------------------SPASE_I_2 --------------------------------------------------------------------------------------------------------------SPASE_I_3 ------------------------------------------ PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1b12 B 79 FIYEPFQIPSGSMMPTLLIGDFILVEKF----------------GHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGC-----CENALPVTYSNVEPSDFVQTFSR----EATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD---------LRLSRIGGIH 323
88 98 | - - | 128 138 148 158 168 | 178 188 198 | 208 218 228 238 248 258 268 278 288 298 | - | 318
106 123 170 176 198 203 304 314
Chain C from PDB Type:PROTEIN Length:226
aligned with LEP_ECOLI | P00803 from UniProtKB/Swiss-Prot Length:324
Alignment length:246
88 98 108 118 128 138 148 158 168 178 188 198 208 218 228 238 248 258 268 278 288 298 308 318
LEP_ECOLI 79 SFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 324
SCOP domains d1b12c_ C: Type 1 signal pepti dase SCOP domains
CATH domains 1b12C01 C:78-153,C:263-321 Umu d Fragment, subunit A 1b12C02 C:154-188,C:224-262 --------- --------------------1b12C02 C:154-188,C:224-262 1b12C01 C:78-153,C:263-321 Umud Fragment, subunit A -- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.................eeeeeee..--------------........eeeee.......eeeeeeee....eeeee....eeeee..............eee...eeeeeeeee.------..eeeee..........eeeeeeeeee..eeeeeee......hhhhh.........eee....eeeee........hhhhhh.ee...eeeeeeeeeee............hhhhhee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ----------SPASE_I_-------------------------------------------------SPASE_I_2 --------------------------------------------------------------------------------------------------------------SPASE_I_3 ------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1b12 C 78 SFIYEPFQIPSGSMMPTLLIGDFILVEKFA--------------TGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFS------ATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 323
87 97 107 - | 127 137 147 157 167 177 187 197 |207 217 227 237 247 257 267 277 287 297 307 317
107 122 197 204
Chain D from PDB Type:PROTEIN Length:222
aligned with LEP_ECOLI | P00803 from UniProtKB/Swiss-Prot Length:324
Alignment length:247
87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317
LEP_ECOLI 78 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH 324
SCOP domains d1b12d_ D: Type 1 signal peptidase SCOP domains
CATH domains 1b12D01 D:77-153,D:263-320 Umud Fragment, subunit A 1b12D02 D:154-1 88,D:224-2--------- -------------------1b12D02 D:154-188,D:224-262 1b12D01 D:77-153,D:263-320 Umud Fragment, subunit --- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeee.............eeeeeee.eeeee......eeeee.......eeeee.......eeeeeeee....eeeee....eeeee.----------...eee...eeeeeeee..-------..eeee.........eeeeeeeeeee..eeeeeee......hhhhh.........eee....eeeee........hhhhhh.ee...eeeeeeeeeee..--------..hhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------SPASE_I_-------------------------------------------------SPASE_I_2 --------------------------------------------------------------------------------------------------------------SPASE_I_3 ------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1b12 D 77 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQP----------ALPVTYSNVEPSDFVQTFS-------TSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD--------GLRLSRIGGIH 323
86 96 106 116 126 136 146 156 166 | - | 186 196| 206 216 226 236 246 256 266 276 286 296 | - |316
168 179 197 205 304 313
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |