1JA1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CYPOR-TRIPLE MUTANT

Authors :   P. A. Hubbard, A. L. Shen, R. Paschke, C. B. Kasper, J. J. Kim

Date :   29 May 01 (Deposition) - 22 Aug 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Nadph-Cytochrome P450 Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. A. Hubbard, A. L. Shen, R. Paschke, C. B. Kasper, J. J. Kim
Nadph-Cytochrome P450 Oxidoreductase. Structural Basis For Hydride And Electron Transfer.
J. Biol. Chem. V. 276 29163 2001
PubMed-ID: 11371558 | Reference-DOI: 10.1074/JBC.M101731200
(for further references see the PDB file header)

Molecule 1 - NADPH-CYTOCHROME P450 REDUCTASE
	Chains	:	A, B
	EC Number	:	1.6.2.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POR263
	Expression System Strain	:	C1A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CYPOR
	Mutation	:	YES
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	NADPH-CYTOCHROME P450 OXIDOREDUCTASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	EPE	-1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 2 (4, 4)

No.	Name	Count	Type	Full Name
1	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:319 , ARG A:424 , ARG A:454 , TYR A:455 , TYR A:456 , ALA A:457 , CYS A:472 , ALA A:473 , VAL A:474 , TYR A:478 , GLY A:488 , VAL A:489 , ALA A:490 , THR A:491 , ARG A:514 , ALA A:538 , TRP A:677 , NAP A:1752 , HOH A:1759 , HOH A:1767 , HOH A:1783 , HOH A:1790 , HOH A:1795 , HOH A:1796 , HOH A:1828 , HOH A:1840 , HOH A:1866 , HOH A:1932 , HOH A:2023 , HOH A:2127 , HOH A:2339 , HOH A:2353 , HOH A:2372	BINDING SITE FOR RESIDUE FAD A 1750
2	AC2	SOFTWARE	HIS B:319 , ARG B:424 , ARG B:454 , TYR B:455 , TYR B:456 , ALA B:457 , CYS B:472 , ALA B:473 , VAL B:474 , TYR B:478 , GLY B:488 , VAL B:489 , ALA B:490 , THR B:491 , ARG B:514 , ALA B:538 , TRP B:677 , NAP B:1852 , HOH B:1854 , HOH B:1859 , HOH B:1889 , HOH B:1906 , HOH B:1917 , HOH B:1927 , HOH B:1946 , HOH B:1961 , HOH B:1970 , HOH B:2074 , HOH B:2092 , HOH B:2265	BINDING SITE FOR RESIDUE FAD B 1850
3	AC3	SOFTWARE	SER A:86 , GLN A:87 , THR A:88 , GLY A:89 , THR A:90 , ALA A:91 , ALA A:138 , THR A:139 , TYR A:140 , GLY A:141 , GLY A:143 , LEU A:173 , GLY A:174 , ASN A:175 , TYR A:178 , HIS A:180 , PHE A:181 , ASN A:182 , ASP A:208 , LEU A:212 , HOH A:1934 , HOH A:1942 , HOH A:2138	BINDING SITE FOR RESIDUE FMN A 1751
4	AC4	SOFTWARE	SER B:86 , GLN B:87 , THR B:88 , GLY B:89 , THR B:90 , ALA B:91 , ALA B:138 , THR B:139 , TYR B:140 , GLY B:141 , LEU B:173 , GLY B:174 , ASN B:175 , TYR B:178 , HIS B:180 , PHE B:181 , ASN B:182 , ASP B:208 , LEU B:212 , HOH B:2117	BINDING SITE FOR RESIDUE FMN B 1851
5	AC5	SOFTWARE	ARG A:298 , GLY A:534 , THR A:535 , CYS A:566 , ARG A:567 , SER A:596 , ARG A:597 , LYS A:602 , TYR A:604 , GLN A:606 , ASN A:635 , MET A:636 , ASP A:639 , SER A:678 , FAD A:1750 , HOH A:1753 , HOH A:1770 , HOH A:1772 , HOH A:1996 , HOH A:2054 , HOH A:2121	BINDING SITE FOR RESIDUE NAP A 1752
6	AC6	SOFTWARE	ARG B:298 , GLY B:534 , THR B:535 , CYS B:566 , ARG B:567 , SER B:596 , ARG B:597 , LYS B:602 , TYR B:604 , GLN B:606 , ASP B:632 , ARG B:634 , ASN B:635 , MET B:636 , ASP B:639 , TRP B:677 , SER B:678 , FAD B:1850 , HOH B:1857 , HOH B:1867 , HOH B:1878 , HOH B:1891 , HOH B:1991 , HOH B:2009 , HOH B:2102 , HOH B:2159 , HOH B:2181	BINDING SITE FOR RESIDUE NAP B 1852
7	AC7	SOFTWARE	PRO A:435 , HIS B:607 , ASN B:635 , ASP B:639 , HOH B:1940 , HOH B:1990	BINDING SITE FOR RESIDUE EPE B 1753

(no "SS Bond" information available for 1JA1)

Asymmetric Unit

No.	Residues
1	Pro A:274	-	Pro A:275
2	Cys A:363	-	Pro A:364
3	Gly A:652	-	Pro A:653
4	Pro B:274	-	Pro B:275
5	Cys B:363	-	Pro B:364
6	Gly B:652	-	Pro B:653

(no "SAP(SNP)/Variant" information available for 1JA1)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NCPR_RAT	80-224	2	A:80-224 B:80-224
2	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	NCPR_RAT	279-521	2	A:279-521 B:279-521

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NCPR_RAT	80-224	1	A:80-224 -
2	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	NCPR_RAT	279-521	1	A:279-521 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NCPR_RAT	80-224	1	- B:80-224
2	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	NCPR_RAT	279-521	1	- B:279-521

Asymmetric Unit (14, 28)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000001961	1	ENSRNOE00000313628	chr12:22154339-22154313	27	NCPR_RAT	-	0	0	-	-
1.2	ENSRNOT00000001961	2	ENSRNOE00000013698	chr12:22097301-22097110	192	NCPR_RAT	1-60	60	0	-	-
1.3	ENSRNOT00000001961	3	ENSRNOE00000013699	chr12:22086163-22086115	49	NCPR_RAT	60-76	17	2	A:63-76 B:65-76	14 12
1.4	ENSRNOT00000001961	4	ENSRNOE00000013700	chr12:22084470-22084342	129	NCPR_RAT	77-119	43	2	A:77-119 B:77-119	43 43
1.5	ENSRNOT00000001961	5	ENSRNOE00000013701	chr12:22083630-22083481	150	NCPR_RAT	120-169	50	2	A:120-169 B:120-169	50 50
1.6	ENSRNOT00000001961	6	ENSRNOE00000013702	chr12:22083067-22082943	125	NCPR_RAT	170-211	42	2	A:170-211 B:170-211	42 42
1.7	ENSRNOT00000001961	7	ENSRNOE00000013703	chr12:22082851-22082762	90	NCPR_RAT	211-241	31	2	A:211-241 B:211-241	31 31
1.8	ENSRNOT00000001961	8	ENSRNOE00000013704	chr12:22082368-22082270	99	NCPR_RAT	241-274	34	2	A:241-274 B:241-274	34 34
1.9	ENSRNOT00000001961	9	ENSRNOE00000013705	chr12:22081493-22081377	117	NCPR_RAT	274-313	40	2	A:274-313 B:274-313	40 40
1.10	ENSRNOT00000001961	10	ENSRNOE00000013706	chr12:22081288-22081170	119	NCPR_RAT	313-353	41	2	A:313-353 B:313-353	41 41
1.11	ENSRNOT00000001961	11	ENSRNOE00000013707	chr12:22080459-22080278	182	NCPR_RAT	353-413	61	2	A:353-413 B:353-413	61 61
1.12	ENSRNOT00000001961	12	ENSRNOE00000013708	chr12:22080183-22080034	150	NCPR_RAT	414-463	50	2	A:414-463 B:414-463	50 50
1.13	ENSRNOT00000001961	13	ENSRNOE00000013709	chr12:22079929-22079659	271	NCPR_RAT	464-554	91	2	A:464-554 B:464-554	91 91
1.14	ENSRNOT00000001961	14	ENSRNOE00000013710	chr12:22079578-22079433	146	NCPR_RAT	554-602	49	2	A:554-602 B:554-602	49 49
1.15	ENSRNOT00000001961	15	ENSRNOE00000013711	chr12:22079343-22079258	86	NCPR_RAT	603-631	29	2	A:603-631 B:603-631	29 29
1.16	ENSRNOT00000001961	16	ENSRNOE00000211856	chr12:22079134-22078629	506	NCPR_RAT	631-678	48	2	A:631-678 B:631-678	48 48

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:616
 aligned with NCPR_RAT | P00388 from UniProtKB/Swiss-Prot  Length:678

    Alignment length:616
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672      
             NCPR_RAT    63 PVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATGEESSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
               SCOP domains d1ja1a2 A:63-239 NADPH-cytochrome p450 reductase, N-terminal domain                                                                                                              d1ja1a1 A:240-518 NADPH-cytochrome p450 reductase                                                                                                                                                                                                                                      d1ja1a3 A:519-678 NADPH-cytochrome p450 reductase                                                                                                                SCOP domains
               CATH domains -1ja1A01 A:64-235  [code=3.40.50.360, no name defined]                                                                                                                       -----------------------------------1ja1A02 A:271-324,A:451-518 Translation factors       1ja1A03 A:325-450 NADPH-cytochrome p450 Reductase; Chain A, domain 3                                                          1ja1A02 A:271-324,A:451-518 Translation factors                     1ja1A04 A:519-676 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module                                                                         -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeeeee...ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee...hhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhh......eeeeee..............eehhhhhhhh.......hhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhhh..........eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------FLAVODOXIN_LIKE  PDB: A:80-224 UniProt: 80-224                                                                                                   ------------------------------------------------------FAD_FR  PDB: A:279-521 UniProt: 279-521                                                                                                                                                                                                            ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3      Exon 1.4  PDB: A:77-119 UniProt: 77-119    Exon 1.5  PDB: A:120-169 UniProt: 120-169         Exon 1.6  PDB: A:170-211 UniProt: 170-211 -----------------------------Exon 1.8  PDB: A:241-274          --------------------------------------Exon 1.10  PDB: A:313-353                ------------------------------------------------------------Exon 1.12  PDB: A:414-463 UniProt: 414-463        Exon 1.13  PDB: A:464-554 UniProt: 464-554                                                 ------------------------------------------------Exon 1.15  PDB: A:603-631    ----------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: A:211-241       --------------------------------Exon 1.9  PDB: A:274-313                ---------------------------------------Exon 1.11  PDB: A:353-413 UniProt: 353-413                   --------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14  PDB: A:554-602 UniProt: 554-602       ----------------------------Exon 1.16  PDB: A:631-678 UniProt: 631-678       Transcript 1 (2)
                 1ja1 A  63 PVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATGEESSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVWS 678
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672

Chain B from PDB  Type:PROTEIN  Length:614
 aligned with NCPR_RAT | P00388 from UniProtKB/Swiss-Prot  Length:678

    Alignment length:614
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674    
             NCPR_RAT    65 KESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATGEESSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
               SCOP domains d1ja1b2 B:65-239 NADPH-cytochrome p450 reductase, N-terminal domain                                                                                                            d1ja1b1 B:240-518 NADPH-cytochrome p450 reductase                                                                                                                                                                                                                                      d1ja1b3 B:519-678 NADPH-cytochrome p450 reductase                                                                                                                SCOP domains
               CATH domains 1ja1B01 B:65-235  [code=3.40.50.360, no name defined]                                                                                                                      -----------------------------------1ja1B02 B:271-324,B:451-518 Translation factors       1ja1B03 B:325-450 NADPH-cytochrome p450 Reductase; Chain A, domain 3                                                          1ja1B02 B:271-324,B:451-518 Translation factors                     1ja1B04 B:519-676 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module                                                                         -- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhh.......eeeeeeeee...ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh.............eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhhh.....eeeeee..............eehhhhhhhh.......hhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh...........eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------FLAVODOXIN_LIKE  PDB: B:80-224 UniProt: 80-224                                                                                                   ------------------------------------------------------FAD_FR  PDB: B:279-521 UniProt: 279-521                                                                                                                                                                                                            ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3    Exon 1.4  PDB: B:77-119 UniProt: 77-119    Exon 1.5  PDB: B:120-169 UniProt: 120-169         Exon 1.6  PDB: B:170-211 UniProt: 170-211 -----------------------------Exon 1.8  PDB: B:241-274          --------------------------------------Exon 1.10  PDB: B:313-353                ------------------------------------------------------------Exon 1.12  PDB: B:414-463 UniProt: 414-463        Exon 1.13  PDB: B:464-554 UniProt: 464-554                                                 ------------------------------------------------Exon 1.15  PDB: B:603-631    ----------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: B:211-241       --------------------------------Exon 1.9  PDB: B:274-313                ---------------------------------------Exon 1.11  PDB: B:353-413 UniProt: 353-413                   --------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14  PDB: B:554-602 UniProt: 554-602       ----------------------------Exon 1.16  PDB: B:631-678 UniProt: 631-678       Transcript 1 (2)
                 1ja1 B  65 KESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATGEESSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVWS 678
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1JA1)

Asymmetric Unit(hide GO term definitions)

Chain A,B (NCPR_RAT | P00388)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0003958	NADPH-hemoprotein reductase activity	Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein.
	GO:0030586	[methionine synthase] reductase activity	Catalysis of the reaction: [methionine synthase]-cob(II)alamin + NADPH + H+ + S-adenosyl methionine = [methionine synthase]-methylcob(I)alamin + S-adenosylhomocysteine + NADP+.
	GO:0004128	cytochrome-b5 reductase activity, acting on NAD(P)H	Catalysis of the reaction: NAD(P)H + H+ + 2 ferricytochrome b(5) = NAD(P)+ + 2 ferrocytochrome b(5).
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0047726	iron-cytochrome-c reductase activity	Catalysis of the reaction: ferrocytochrome c + Fe3+ = ferricytochrome c + Fe2+.
	GO:0008941	nitric oxide dioxygenase activity	Catalysis of the reaction: 2 NO + 2 O2 + NADPH + H+ = 2 nitrate + NADP+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0009437	carnitine metabolic process	The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
	GO:0090346	cellular organofluorine metabolic process	The chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells.
	GO:0071372	cellular response to follicle-stimulating hormone stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a follicle-stimulating hormone stimulus.
	GO:0071371	cellular response to gonadotropin stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gonadotropin stimulus.
	GO:0071375	cellular response to peptide hormone stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.
	GO:0070988	demethylation	The process of removing one or more methyl groups from a molecule.
	GO:0019395	fatty acid oxidation	The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen.
	GO:0009812	flavonoid metabolic process	The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins.
	GO:0018393	internal peptidyl-lysine acetylation	The addition of an acetyl group to a non-terminal lysine residue in a protein.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0043154	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.
	GO:0060192	negative regulation of lipase activity	Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid.
	GO:0043602	nitrate catabolic process	The chemical reactions and pathways resulting in the breakdown of nitrates, inorganic or organic salts and esters of nitric acid.
	GO:0046210	nitric oxide catabolic process	The chemical reactions and pathways resulting in the breakdown of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0045542	positive regulation of cholesterol biosynthetic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol.
	GO:0032332	positive regulation of chondrocyte differentiation	Any process that activates or increases the frequency, rate or extent of chondrocyte differentiation.
	GO:0032770	positive regulation of monooxygenase activity	Any process that activates or increases the activity of a monooxygenase.
	GO:0045880	positive regulation of smoothened signaling pathway	Any process that activates or increases the frequency, rate or extent of smoothened signaling.
	GO:0090031	positive regulation of steroid hormone biosynthetic process	Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.
	GO:0090181	regulation of cholesterol metabolic process	Any process that modulates the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
	GO:0003420	regulation of growth plate cartilage chondrocyte proliferation	Any process that modulates the rate, frequency, or extent of the multiplication or reproduction of chondrocytes in a growing endochondral bone, resulting in the expansion of a cell population.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0007584	response to nutrient	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
cellular component
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	1ja1
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	1.6.2.4
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	NCPR_RAT \| P00388	:	1amo 1j9z 1ja0 3es9 3ojw 3ojx 3wkt 4y7c 4y9r 4y9u 4yaf 4yal 4yao 4yau 4yaw

1amo	1AMO IS CYPOR - WILD TYPE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

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SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (14, 28)

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Gene Ontology (42, 42)

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Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File