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(-) Description

Title :  RAT CYPOR MUTANT - G141DEL/E142N
 
Authors :  C. Xia, J. J. P. Kim
Date :  13 Feb 15  (Deposition) - 24 Feb 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cytochrome P450 Reductase, Fmn Binding, Semiquinone, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Rwere, C. Xia, S. Im, M. M. Haque, D. J. Stuehr, L. Waskell, J. J. Kim
Mutants Of Cytochrome P450 Reductase Lacking Either Gly-141 Or Gly-143 Destabilize Its Fmn Semiquinone.
J. Biol. Chem. V. 291 14639 2016
PubMed-ID: 27189945  |  Reference-DOI: 10.1074/JBC.M116.724625

(-) Compounds

Molecule 1 - NADPH--CYTOCHROME P450 REDUCTASE
    Chains: A, B
    EC Number: 1.6.2.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23B
    Expression System Strain: C41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 57-678
    Gene: POR
    Mutation: YES
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: P450R
    Variant: DELTA56

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 2 (4, 4)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PO41Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:86 , GLN A:87 , THR A:88 , GLY A:89 , THR A:90 , ALA A:91 , ALA A:138 , THR A:139 , TYR A:140 , ASN A:142 , GLY A:143 , LEU A:173 , GLY A:174 , ASN A:175 , TYR A:178 , HIS A:180 , PHE A:181 , ASN A:182 , ASP A:208 , LEU A:212binding site for residue FMN A 701
2AC2SOFTWAREHIS A:319 , ARG A:424 , ARG A:454 , TYR A:455 , TYR A:456 , SER A:457 , CYS A:472 , ALA A:473 , VAL A:474 , TYR A:478 , GLY A:488 , VAL A:489 , ALA A:490 , THR A:491 , TRP A:677 , HOH A:867 , HOH A:882 , HOH A:890 , HOH A:927 , HOH A:936 , HOH A:940 , HOH A:944 , HOH A:1026 , HOH A:1124 , HOH A:1218binding site for residue FAD A 702
3AC3SOFTWAREARG A:298 , GLY A:534 , THR A:535 , CYS A:566 , SER A:596 , ARG A:597 , LYS A:602 , TYR A:604 , GLN A:606 , ASN A:635 , MET A:636 , ASP A:639 , HOH A:860 , HOH A:979 , HOH A:1121 , HOH A:1125 , HOH A:1145 , HOH A:1168binding site for residue NAP A 703
4AC4SOFTWARESER B:86 , GLN B:87 , THR B:88 , GLY B:89 , THR B:90 , ALA B:91 , ALA B:138 , THR B:139 , TYR B:140 , ASN B:142 , GLY B:143 , LEU B:173 , GLY B:174 , ASN B:175 , TYR B:178 , HIS B:180 , PHE B:181 , ASN B:182 , ASP B:208 , LEU B:212binding site for residue FMN B 701
5AC5SOFTWAREARG B:424 , ARG B:454 , TYR B:455 , TYR B:456 , SER B:457 , CYS B:472 , ALA B:473 , VAL B:474 , TYR B:478 , GLY B:488 , VAL B:489 , ALA B:490 , THR B:491 , TRP B:677 , HOH B:819 , HOH B:830 , HOH B:836 , HOH B:864 , HOH B:865 , HOH B:916 , HOH B:962 , HOH B:996 , HOH B:1064 , HOH B:1122binding site for residue FAD B 702
6AC6SOFTWAREARG B:298 , GLY B:534 , THR B:535 , CYS B:566 , SER B:596 , ARG B:597 , LYS B:602 , TYR B:604 , GLN B:606 , ASN B:635 , MET B:636 , ASP B:639 , HOH B:853 , HOH B:951 , HOH B:1021 , HOH B:1037 , HOH B:1053 , HOH B:1055 , HOH B:1077binding site for residue NAP B 703
7AC7SOFTWAREHIS B:465 , PRO B:466 , ASN B:467 , SER B:468binding site for residue PO4 B 704
8AC8SOFTWAREPHE B:135 , MET B:184 , LYS B:186 , TYR B:187 , ASP B:189 , GLN B:190 , ARG B:191 , GLU B:193 , GLN B:194 , LEU B:195 , GLY B:196 , ALA B:197binding site for Di-peptide VAL B 188 and LEU B 192

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y7C)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro A:274 -Pro A:275
2Cys A:363 -Pro A:364
3Gly A:652 -Pro A:653
4Pro B:274 -Pro B:275
5Cys B:363 -Pro B:364
6Gly B:652 -Pro B:653

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y7C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y7C)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y7C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:611
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeeeee..ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee...hhhhhhhhhhhhhhhhhhhhhh...........eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhh......eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhhh......eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y7c A  62 PPVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYNGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATEESSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
                                    71        81        91       101       111       121       131       142       152       162       172       182       192       202       212       222       232   ||  243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493      |507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677 
                                                                                                        140|                                                                                           236|                                                                                                                                                                                                                                                                   500|                                                                                                                                                                             
                                                                                                         142                                                                                            238                                                                                                                                                                                                                                                                    505                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:605
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhh........eeeeeeeee..ee...hhhhhhhh..........eeeeeeee.......hhhhhhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.......eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhhh.....eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh.......eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhhh.hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y7c B  64 VKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYNGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
                                    73        83        93       103       113       123       133      |144       154       164       174       184       194       204       214       224       234 ||    249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499 ||    513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673     
                                                                                                      140|                                                                                           236|                                                                                                                                                                                                                                                                501|                                                                                                                                                                            
                                                                                                       142                                                                                            242                                                                                                                                                                                                                                                                 506
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y7C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y7C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y7C)

(-) Gene Ontology  (42, 42)

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  4y7c
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  NCPR_RAT | P00388
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  1.6.2.4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCPR_RAT | P00388: 1amo 1j9z 1ja0 1ja1 3es9 3ojw 3ojx 3wkt 4y9r 4y9u 4yaf 4yal 4yao 4yau 4yaw

(-) Related Entries Specified in the PDB File

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