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1JA1
Asym. Unit
Info
Asym.Unit (234 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
CYPOR-TRIPLE MUTANT
Authors
:
P. A. Hubbard, A. L. Shen, R. Paschke, C. B. Kasper, J. J. Kim
Date
:
29 May 01 (Deposition) - 22 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Nadph-Cytochrome P450 Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. A. Hubbard, A. L. Shen, R. Paschke, C. B. Kasper, J. J. Kim
Nadph-Cytochrome P450 Oxidoreductase. Structural Basis For Hydride And Electron Transfer.
J. Biol. Chem. V. 276 29163 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 7)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
3b: FLAVIN MONONUCLEOTIDE (FMNb)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:319 , ARG A:424 , ARG A:454 , TYR A:455 , TYR A:456 , ALA A:457 , CYS A:472 , ALA A:473 , VAL A:474 , TYR A:478 , GLY A:488 , VAL A:489 , ALA A:490 , THR A:491 , ARG A:514 , ALA A:538 , TRP A:677 , NAP A:1752 , HOH A:1759 , HOH A:1767 , HOH A:1783 , HOH A:1790 , HOH A:1795 , HOH A:1796 , HOH A:1828 , HOH A:1840 , HOH A:1866 , HOH A:1932 , HOH A:2023 , HOH A:2127 , HOH A:2339 , HOH A:2353 , HOH A:2372
BINDING SITE FOR RESIDUE FAD A 1750
2
AC2
SOFTWARE
HIS B:319 , ARG B:424 , ARG B:454 , TYR B:455 , TYR B:456 , ALA B:457 , CYS B:472 , ALA B:473 , VAL B:474 , TYR B:478 , GLY B:488 , VAL B:489 , ALA B:490 , THR B:491 , ARG B:514 , ALA B:538 , TRP B:677 , NAP B:1852 , HOH B:1854 , HOH B:1859 , HOH B:1889 , HOH B:1906 , HOH B:1917 , HOH B:1927 , HOH B:1946 , HOH B:1961 , HOH B:1970 , HOH B:2074 , HOH B:2092 , HOH B:2265
BINDING SITE FOR RESIDUE FAD B 1850
3
AC3
SOFTWARE
SER A:86 , GLN A:87 , THR A:88 , GLY A:89 , THR A:90 , ALA A:91 , ALA A:138 , THR A:139 , TYR A:140 , GLY A:141 , GLY A:143 , LEU A:173 , GLY A:174 , ASN A:175 , TYR A:178 , HIS A:180 , PHE A:181 , ASN A:182 , ASP A:208 , LEU A:212 , HOH A:1934 , HOH A:1942 , HOH A:2138
BINDING SITE FOR RESIDUE FMN A 1751
4
AC4
SOFTWARE
SER B:86 , GLN B:87 , THR B:88 , GLY B:89 , THR B:90 , ALA B:91 , ALA B:138 , THR B:139 , TYR B:140 , GLY B:141 , LEU B:173 , GLY B:174 , ASN B:175 , TYR B:178 , HIS B:180 , PHE B:181 , ASN B:182 , ASP B:208 , LEU B:212 , HOH B:2117
BINDING SITE FOR RESIDUE FMN B 1851
5
AC5
SOFTWARE
ARG A:298 , GLY A:534 , THR A:535 , CYS A:566 , ARG A:567 , SER A:596 , ARG A:597 , LYS A:602 , TYR A:604 , GLN A:606 , ASN A:635 , MET A:636 , ASP A:639 , SER A:678 , FAD A:1750 , HOH A:1753 , HOH A:1770 , HOH A:1772 , HOH A:1996 , HOH A:2054 , HOH A:2121
BINDING SITE FOR RESIDUE NAP A 1752
6
AC6
SOFTWARE
ARG B:298 , GLY B:534 , THR B:535 , CYS B:566 , ARG B:567 , SER B:596 , ARG B:597 , LYS B:602 , TYR B:604 , GLN B:606 , ASP B:632 , ARG B:634 , ASN B:635 , MET B:636 , ASP B:639 , TRP B:677 , SER B:678 , FAD B:1850 , HOH B:1857 , HOH B:1867 , HOH B:1878 , HOH B:1891 , HOH B:1991 , HOH B:2009 , HOH B:2102 , HOH B:2159 , HOH B:2181
BINDING SITE FOR RESIDUE NAP B 1852
7
AC7
SOFTWARE
PRO A:435 , HIS B:607 , ASN B:635 , ASP B:639 , HOH B:1940 , HOH B:1990
BINDING SITE FOR RESIDUE EPE B 1753
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FLAVODOXIN_LIKE (A:80-224,B:80-224)
2: FAD_FR (A:279-521,B:279-521)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAVODOXIN_LIKE
PS50902
Flavodoxin-like domain profile.
NCPR_RAT
80-224
2
A:80-224
B:80-224
2
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
NCPR_RAT
279-521
2
A:279-521
B:279-521
[
close PROSITE info
]
Exons
(14, 28)
Info
All Exons
Exon 1.3 (A:63-76 | B:65-76)
Exon 1.4 (A:77-119 | B:77-119)
Exon 1.5 (A:120-169 | B:120-169)
Exon 1.6 (A:170-211 | B:170-211)
Exon 1.7 (A:211-241 | B:211-241)
Exon 1.8 (A:241-274 | B:241-274)
Exon 1.9 (A:274-313 | B:274-313)
Exon 1.10 (A:313-353 | B:313-353)
Exon 1.11 (A:353-413 | B:353-413)
Exon 1.12 (A:414-463 | B:414-463)
Exon 1.13 (A:464-554 | B:464-554)
Exon 1.14 (A:554-602 | B:554-602)
Exon 1.15 (A:603-631 | B:603-631)
Exon 1.16 (A:631-678 | B:631-678)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14
13: Boundary 1.14/1.15
14: Boundary 1.15/1.16
15: Boundary 1.16/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000001961
1
ENSRNOE00000313628
chr12:
22154339-22154313
27
NCPR_RAT
-
0
0
-
-
1.2
ENSRNOT00000001961
2
ENSRNOE00000013698
chr12:
22097301-22097110
192
NCPR_RAT
1-60
60
0
-
-
1.3
ENSRNOT00000001961
3
ENSRNOE00000013699
chr12:
22086163-22086115
49
NCPR_RAT
60-76
17
2
A:63-76
B:65-76
14
12
1.4
ENSRNOT00000001961
4
ENSRNOE00000013700
chr12:
22084470-22084342
129
NCPR_RAT
77-119
43
2
A:77-119
B:77-119
43
43
1.5
ENSRNOT00000001961
5
ENSRNOE00000013701
chr12:
22083630-22083481
150
NCPR_RAT
120-169
50
2
A:120-169
B:120-169
50
50
1.6
ENSRNOT00000001961
6
ENSRNOE00000013702
chr12:
22083067-22082943
125
NCPR_RAT
170-211
42
2
A:170-211
B:170-211
42
42
1.7
ENSRNOT00000001961
7
ENSRNOE00000013703
chr12:
22082851-22082762
90
NCPR_RAT
211-241
31
2
A:211-241
B:211-241
31
31
1.8
ENSRNOT00000001961
8
ENSRNOE00000013704
chr12:
22082368-22082270
99
NCPR_RAT
241-274
34
2
A:241-274
B:241-274
34
34
1.9
ENSRNOT00000001961
9
ENSRNOE00000013705
chr12:
22081493-22081377
117
NCPR_RAT
274-313
40
2
A:274-313
B:274-313
40
40
1.10
ENSRNOT00000001961
10
ENSRNOE00000013706
chr12:
22081288-22081170
119
NCPR_RAT
313-353
41
2
A:313-353
B:313-353
41
41
1.11
ENSRNOT00000001961
11
ENSRNOE00000013707
chr12:
22080459-22080278
182
NCPR_RAT
353-413
61
2
A:353-413
B:353-413
61
61
1.12
ENSRNOT00000001961
12
ENSRNOE00000013708
chr12:
22080183-22080034
150
NCPR_RAT
414-463
50
2
A:414-463
B:414-463
50
50
1.13
ENSRNOT00000001961
13
ENSRNOE00000013709
chr12:
22079929-22079659
271
NCPR_RAT
464-554
91
2
A:464-554
B:464-554
91
91
1.14
ENSRNOT00000001961
14
ENSRNOE00000013710
chr12:
22079578-22079433
146
NCPR_RAT
554-602
49
2
A:554-602
B:554-602
49
49
1.15
ENSRNOT00000001961
15
ENSRNOE00000013711
chr12:
22079343-22079258
86
NCPR_RAT
603-631
29
2
A:603-631
B:603-631
29
29
1.16
ENSRNOT00000001961
16
ENSRNOE00000211856
chr12:
22079134-22078629
506
NCPR_RAT
631-678
48
2
A:631-678
B:631-678
48
48
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1ja1a1 (A:240-518)
1b: SCOP_d1ja1b1 (B:240-518)
2a: SCOP_d1ja1a3 (A:519-678)
2b: SCOP_d1ja1b3 (B:519-678)
3a: SCOP_d1ja1a2 (A:63-239)
3b: SCOP_d1ja1b2 (B:65-239)
View:
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
NADPH-cytochrome p450 reductase FAD-binding domain-like
(16)
Protein domain
:
NADPH-cytochrome p450 reductase
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
1a
d1ja1a1
A:240-518
1b
d1ja1b1
B:240-518
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
NADPH-cytochrome p450 reductase-like
(8)
Protein domain
:
NADPH-cytochrome p450 reductase
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
2a
d1ja1a3
A:519-678
2b
d1ja1b3
B:519-678
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Flavoproteins
(208)
Family
:
Cytochrome p450 reductase N-terminal domain-like
(7)
Protein domain
:
NADPH-cytochrome p450 reductase, N-terminal domain
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
3a
d1ja1a2
A:63-239
3b
d1ja1b2
B:65-239
[
close SCOP info
]
CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1ja1A01 (A:64-235)
1b: CATH_1ja1B01 (B:65-235)
2a: CATH_1ja1A04 (A:519-676)
2b: CATH_1ja1B04 (B:519-676)
3a: CATH_1ja1A03 (A:325-450)
3b: CATH_1ja1B03 (B:325-450)
4a: CATH_1ja1A02 (A:271-324,A:451-518)
4b: CATH_1ja1B02 (B:271-324,B:451-518)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.360, no name defined]
(150)
Norway rat (Rattus norvegicus)
(4)
1a
1ja1A01
A:64-235
1b
1ja1B01
B:65-235
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Norway rat (Rattus norvegicus)
(9)
2a
1ja1A04
A:519-676
2b
1ja1B04
B:519-676
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
NADPH-cytochrome p450 Reductase; Chain A, domain 3
(8)
Homologous Superfamily
:
NADPH-cytochrome p450 Reductase; Chain A, domain 3
(8)
Norway rat (Rattus norvegicus)
(6)
3a
1ja1A03
A:325-450
3b
1ja1B03
B:325-450
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Norway rat (Rattus norvegicus)
(9)
4a
1ja1A02
A:271-324,A:451-518
4b
1ja1B02
B:271-324,B:451-518
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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