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(-) Description

Title :  REDUCED CYPOR WITH 2'-AMP
 
Authors :  C. Xia, J. J. P. Kim
Date :  17 Feb 15  (Deposition) - 02 Mar 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cytochrome P450 Reductase, Fmn Binding, Semiquinone, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Rwere, C. Xia, S. Im, M. M. Haque, D. J. Stuehr, L. Waskell, J. J. Kim
Mutants Of Cytochrome P450 Reductase Lacking Either Gly-141 Or Gly-143 Destabilize Its Fmn Semiquinone.
J. Biol. Chem. V. 291 14639 2016
PubMed-ID: 27189945  |  Reference-DOI: 10.1074/JBC.M116.724625

(-) Compounds

Molecule 1 - NADPH--CYTOCHROME P450 REDUCTASE
    Chains: A, B
    EC Number: 1.6.2.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23B
    Expression System Strain: C41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 57-677
    Gene: POR
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: P450R
    Variant: DELTA56

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric Unit (4, 10)
No.NameCountTypeFull Name
12AM2Ligand/IonADENOSINE-2'-MONOPHOSPHATE
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
4PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 5)
No.NameCountTypeFull Name
12AM1Ligand/IonADENOSINE-2'-MONOPHOSPHATE
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
4PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (4, 5)
No.NameCountTypeFull Name
12AM1Ligand/IonADENOSINE-2'-MONOPHOSPHATE
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
4PO42Ligand/IonPHOSPHATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:86 , GLN A:87 , THR A:88 , GLY A:89 , THR A:90 , ALA A:91 , ALA A:138 , THR A:139 , TYR A:140 , GLY A:141 , GLY A:143 , LEU A:173 , GLY A:174 , ASN A:175 , TYR A:178 , HIS A:180 , PHE A:181 , ASN A:182 , ASP A:208 , LEU A:212 , HOH A:896 , HOH A:933 , HOH A:1004 , HOH A:1017 , HOH A:1119binding site for residue FMN A 701
02AC2SOFTWAREHIS A:319 , ARG A:424 , ARG A:454 , TYR A:455 , TYR A:456 , SER A:457 , CYS A:472 , ALA A:473 , VAL A:474 , TYR A:478 , GLY A:488 , VAL A:489 , ALA A:490 , THR A:491 , TRP A:677 , HOH A:831 , HOH A:855 , HOH A:864 , HOH A:883 , HOH A:920 , HOH A:940 , HOH A:1146 , HOH A:1170 , HOH A:1228binding site for residue FAD A 702
03AC3SOFTWARECYS A:566 , ARG A:567 , SER A:596 , ARG A:597 , LYS A:602 , TYR A:604 , GLN A:606 , ASN A:635 , MET A:636 , ASP A:639 , HOH A:892 , HOH A:1055 , HOH A:1136 , HOH A:1169 , HOH A:1247binding site for residue 2AM A 703
04AC4SOFTWAREASN A:293 , GLY A:295 , THR A:296 , GLU A:297 , ARG A:298 , ARG A:567binding site for residue PO4 A 704
05AC5SOFTWAREHIS A:465 , PRO A:466 , ASN A:467 , SER A:468 , HOH A:1126 , HOH A:1190binding site for residue PO4 A 705
06AC6SOFTWARESER B:86 , GLN B:87 , THR B:88 , GLY B:89 , THR B:90 , ALA B:91 , ALA B:138 , THR B:139 , TYR B:140 , GLY B:141 , GLU B:142 , GLY B:143 , LEU B:173 , GLY B:174 , ASN B:175 , TYR B:178 , HIS B:180 , PHE B:181 , ASN B:182 , ASP B:208 , LEU B:212 , HOH B:814 , HOH B:855 , HOH B:858 , HOH B:1050 , HOH B:1084binding site for residue FMN B 701
07AC7SOFTWAREHIS B:319 , ARG B:424 , ARG B:454 , TYR B:455 , TYR B:456 , SER B:457 , CYS B:472 , ALA B:473 , VAL B:474 , TYR B:478 , GLY B:488 , VAL B:489 , ALA B:490 , THR B:491 , TRP B:677 , HOH B:811 , HOH B:826 , HOH B:832 , HOH B:873 , HOH B:874 , HOH B:932 , HOH B:942 , HOH B:1027 , HOH B:1055 , HOH B:1064 , HOH B:1082 , HOH B:1191binding site for residue FAD B 702
08AC8SOFTWARECYS B:566 , ARG B:567 , SER B:596 , ARG B:597 , LYS B:602 , TYR B:604 , GLN B:606 , ASN B:635 , MET B:636 , ASP B:639 , HOH B:844 , HOH B:908 , HOH B:1046 , HOH B:1102 , HOH B:1141 , HOH B:1176binding site for residue 2AM B 703
09AC9SOFTWAREASN B:293 , GLY B:295 , THR B:296 , GLU B:297 , ARG B:298 , ARG B:567 , GLU B:571 , HOH B:845 , HOH B:1014binding site for residue PO4 B 704
10AD1SOFTWAREHIS B:465 , PRO B:466 , ASN B:467 , SER B:468 , HOH B:982binding site for residue PO4 B 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YAL)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro A:274 -Pro A:275
2Cys A:363 -Pro A:364
3Gly A:652 -Pro A:653
4Pro B:274 -Pro B:275
5Cys B:363 -Pro B:364
6Gly B:652 -Pro B:653

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YAL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YAL)

(-) Exons   (0, 0)

(no "Exon" information available for 4YAL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:608
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeeeee...ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee...hhhhhhhhhhhhhhhhhhhhhh........eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhhh.....eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh......eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yal A  62 PPVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEASSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPARALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   ||  245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495    || 510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670        
                                                                                                                                                                                                       235|                                                                                                                                                                                                                                                                 500|                                                                                                                                                                            
                                                                                                                                                                                                        240                                                                                                                                                                                                                                                                  506                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:608
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhh...eeeeeeeee...ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee...hhhhhhhhhhhhhhhhhhhhhh.......eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhhh.....eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh.......eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yal B  62 PPVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    || 246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496   ||  510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670        
                                                                                                                                                                                                        236|                                                                                                                                                                                                                                                               500|                                                                                                                                                                             
                                                                                                                                                                                                         242                                                                                                                                                                                                                                                                505
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YAL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YAL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YAL)

(-) Gene Ontology  (42, 42)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCPR_RAT | P00388: 1amo 1j9z 1ja0 1ja1 3es9 3ojw 3ojx 3wkt 4y7c 4y9r 4y9u 4yaf 4yao 4yau 4yaw

(-) Related Entries Specified in the PDB File

4y9r 4y9u 4yaf 4yao 4yau 4yaw