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1JA1
Biol. Unit 2
Info
Asym.Unit (234 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
CYPOR-TRIPLE MUTANT
Authors
:
P. A. Hubbard, A. L. Shen, R. Paschke, C. B. Kasper, J. J. Kim
Date
:
29 May 01 (Deposition) - 22 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Nadph-Cytochrome P450 Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. A. Hubbard, A. L. Shen, R. Paschke, C. B. Kasper, J. J. Kim
Nadph-Cytochrome P450 Oxidoreductase. Structural Basis For Hydride And Electron Transfer.
J. Biol. Chem. V. 276 29163 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 4)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
3b: FLAVIN MONONUCLEOTIDE (FMNb)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HIS B:319 , ARG B:424 , ARG B:454 , TYR B:455 , TYR B:456 , ALA B:457 , CYS B:472 , ALA B:473 , VAL B:474 , TYR B:478 , GLY B:488 , VAL B:489 , ALA B:490 , THR B:491 , ARG B:514 , ALA B:538 , TRP B:677 , NAP B:1852 , HOH B:1854 , HOH B:1859 , HOH B:1889 , HOH B:1906 , HOH B:1917 , HOH B:1927 , HOH B:1946 , HOH B:1961 , HOH B:1970 , HOH B:2074 , HOH B:2092 , HOH B:2265
BINDING SITE FOR RESIDUE FAD B 1850
2
AC4
SOFTWARE
SER B:86 , GLN B:87 , THR B:88 , GLY B:89 , THR B:90 , ALA B:91 , ALA B:138 , THR B:139 , TYR B:140 , GLY B:141 , LEU B:173 , GLY B:174 , ASN B:175 , TYR B:178 , HIS B:180 , PHE B:181 , ASN B:182 , ASP B:208 , LEU B:212 , HOH B:2117
BINDING SITE FOR RESIDUE FMN B 1851
3
AC6
SOFTWARE
ARG B:298 , GLY B:534 , THR B:535 , CYS B:566 , ARG B:567 , SER B:596 , ARG B:597 , LYS B:602 , TYR B:604 , GLN B:606 , ASP B:632 , ARG B:634 , ASN B:635 , MET B:636 , ASP B:639 , TRP B:677 , SER B:678 , FAD B:1850 , HOH B:1857 , HOH B:1867 , HOH B:1878 , HOH B:1891 , HOH B:1991 , HOH B:2009 , HOH B:2102 , HOH B:2159 , HOH B:2181
BINDING SITE FOR RESIDUE NAP B 1852
4
AC7
SOFTWARE
PRO A:435 , HIS B:607 , ASN B:635 , ASP B:639 , HOH B:1940 , HOH B:1990
BINDING SITE FOR RESIDUE EPE B 1753
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FLAVODOXIN_LIKE (B:80-224)
2: FAD_FR (B:279-521)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAVODOXIN_LIKE
PS50902
Flavodoxin-like domain profile.
NCPR_RAT
80-224
1
-
B:80-224
2
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
NCPR_RAT
279-521
1
-
B:279-521
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1ja1a1 (A:240-518)
1b: SCOP_d1ja1b1 (B:240-518)
2a: SCOP_d1ja1a3 (A:519-678)
2b: SCOP_d1ja1b3 (B:519-678)
3a: SCOP_d1ja1a2 (A:63-239)
3b: SCOP_d1ja1b2 (B:65-239)
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)
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)
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)
(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
NADPH-cytochrome p450 reductase FAD-binding domain-like
(16)
Protein domain
:
NADPH-cytochrome p450 reductase
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
1a
d1ja1a1
A:240-518
1b
d1ja1b1
B:240-518
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
NADPH-cytochrome p450 reductase-like
(8)
Protein domain
:
NADPH-cytochrome p450 reductase
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
2a
d1ja1a3
A:519-678
2b
d1ja1b3
B:519-678
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Flavoproteins
(208)
Family
:
Cytochrome p450 reductase N-terminal domain-like
(7)
Protein domain
:
NADPH-cytochrome p450 reductase, N-terminal domain
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
3a
d1ja1a2
A:63-239
3b
d1ja1b2
B:65-239
[
close SCOP info
]
CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1ja1A01 (A:64-235)
1b: CATH_1ja1B01 (B:65-235)
2a: CATH_1ja1A04 (A:519-676)
2b: CATH_1ja1B04 (B:519-676)
3a: CATH_1ja1A03 (A:325-450)
3b: CATH_1ja1B03 (B:325-450)
4a: CATH_1ja1A02 (A:271-324,A:451-518)
4b: CATH_1ja1B02 (B:271-324,B:451-518)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.360, no name defined]
(150)
Norway rat (Rattus norvegicus)
(4)
1a
1ja1A01
A:64-235
1b
1ja1B01
B:65-235
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Norway rat (Rattus norvegicus)
(9)
2a
1ja1A04
A:519-676
2b
1ja1B04
B:519-676
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
NADPH-cytochrome p450 Reductase; Chain A, domain 3
(8)
Homologous Superfamily
:
NADPH-cytochrome p450 Reductase; Chain A, domain 3
(8)
Norway rat (Rattus norvegicus)
(6)
3a
1ja1A03
A:325-450
3b
1ja1B03
B:325-450
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Norway rat (Rattus norvegicus)
(9)
4a
1ja1A02
A:271-324,A:451-518
4b
1ja1B02
B:271-324,B:451-518
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
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