1CKL - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   N-TERMINAL TWO DOMAINS OF HUMAN CD46 (MEMBRANE COFACTOR PROTEIN, MCP)

Authors :   J. Casasnovas, M. Larvie, T. Stehle

Date :   22 Apr 99 (Deposition) - 11 Jun 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Virus Receptor, Complement Cofactor, Short Consensus Repeat, Scr, Measles Virus, Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. M. Casasnovas, M. Larvie, T. Stehle
Crystal Structure Of Two Cd46 Domains Reveals An Extended Measles Virus-Binding Surface.
Embo J. V. 18 2911 1999
PubMed-ID: 10357804 | Reference-DOI: 10.1093/EMBOJ/18.11.2911

Molecule 1 - PROTEIN (CD46)
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Cell	:	OVARY
	Expression System Cellular Location	:	SECRETED
	Expression System Cell Line	:	CHO LEC 3.2.8.1
	Expression System Common	:	CHINESE HAMSTER
	Expression System Gene	:	HUMAN CD46
	Expression System Taxid	:	10029
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL TWO SCR DOMAINS
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	EXPRESSED IN CHO LEC 3.2.8.1 CELLS (P. STANLEY, 1989, MOL. CELL. BIOL. 9:377)
	Synonym	:	MEMBRANE COFACTOR PROTEIN (MCP)

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 62)

No.	Name	Count	Type	Full Name
1	BMA	9	Ligand/Ion	BETA-D-MANNOSE
2	CA	6	Ligand/Ion	CALCIUM ION
3	CL	5	Ligand/Ion	CHLORIDE ION
4	MAN	18	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	24	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MAN	6	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 3 (1, 4)

No.	Name	Count	Type	Full Name
1	BMA	-1	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 4 (3, 7)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 5 (3, 11)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MAN	5	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 6 (3, 11)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MAN	5	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (62, 62)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:49 , NAG A:2049	BINDING SITE FOR RESIDUE NAG A 1049
02	AC2	SOFTWARE	NAG A:1049 , BMA A:3049 , GLN C:75 , VAL C:77	BINDING SITE FOR RESIDUE NAG A 2049
03	AC3	SOFTWARE	NAG A:2049 , MAN A:4049 , MAN A:4149 , GLN C:75	BINDING SITE FOR RESIDUE BMA A 3049
04	AC4	SOFTWARE	BMA A:3049 , MAN A:5049 , GLU C:95	BINDING SITE FOR RESIDUE MAN A 4049
05	AC5	SOFTWARE	MAN A:4049	BINDING SITE FOR RESIDUE MAN A 5049
06	AC6	SOFTWARE	BMA A:3049 , MAN A:5149 , MAN A:6149	BINDING SITE FOR RESIDUE MAN A 4149
07	AC7	SOFTWARE	MAN A:4149 , MAN A:6149	BINDING SITE FOR RESIDUE MAN A 5149
08	AC8	SOFTWARE	MAN A:4149 , MAN A:5149	BINDING SITE FOR RESIDUE MAN A 6149
09	AC9	SOFTWARE	ALA A:79 , ASN A:80 , GLN A:88 , HIS A:90 , NAG A:2080	BINDING SITE FOR RESIDUE NAG A 1080
10	BC1	SOFTWARE	NAG A:1080 , BMA A:3080	BINDING SITE FOR RESIDUE NAG A 2080
11	BC2	SOFTWARE	NAG A:2080 , MAN A:4080	BINDING SITE FOR RESIDUE BMA A 3080
12	BC3	SOFTWARE	GLU A:124 , BMA A:3080	BINDING SITE FOR RESIDUE MAN A 4080
13	BC4	SOFTWARE	GLN A:75 , VAL A:77 , ASN B:49 , NAG B:2049	BINDING SITE FOR RESIDUE NAG B 1049
14	BC5	SOFTWARE	NAG B:1049 , BMA B:3049	BINDING SITE FOR RESIDUE NAG B 2049
15	BC6	SOFTWARE	NAG B:2049	BINDING SITE FOR RESIDUE BMA B 3049
16	BC7	SOFTWARE	ALA B:79 , ASN B:80 , TYR B:87 , NAG B:2080 , VAL F:126	BINDING SITE FOR RESIDUE NAG B 1080
17	BC8	SOFTWARE	GLN B:88 , NAG B:1080 , BMA B:3080	BINDING SITE FOR RESIDUE NAG B 2080
18	BC9	SOFTWARE	NAG B:2080	BINDING SITE FOR RESIDUE BMA B 3080
19	CC1	SOFTWARE	PRO B:78 , ASN C:49 , THR C:51 , NAG C:2049	BINDING SITE FOR RESIDUE NAG C 1049
20	CC2	SOFTWARE	NAG C:1049	BINDING SITE FOR RESIDUE NAG C 2049
21	CC3	SOFTWARE	ASN C:80 , GLY C:86 , NAG C:2080 , MAN F:4080	BINDING SITE FOR RESIDUE NAG C 1080
22	CC4	SOFTWARE	ALA C:79 , GLN C:88 , HIS C:90 , NAG C:1080	BINDING SITE FOR RESIDUE NAG C 2080
23	CC5	SOFTWARE	ASN D:49 , THR D:51 , NAG D:2049	BINDING SITE FOR RESIDUE NAG D 1049
24	CC6	SOFTWARE	NAG D:1049	BINDING SITE FOR RESIDUE NAG D 2049
25	CC7	SOFTWARE	ALA D:79 , ASN D:80 , GLY D:86 , TYR D:87 , GLN D:88 , HIS D:90 , NAG D:2080	BINDING SITE FOR RESIDUE NAG D 1080
26	CC8	SOFTWARE	NAG D:1080 , BMA D:3080 , MAN D:4180	BINDING SITE FOR RESIDUE NAG D 2080
27	CC9	SOFTWARE	NAG D:2080 , MAN D:4080 , MAN D:4180	BINDING SITE FOR RESIDUE BMA D 3080
28	DC1	SOFTWARE	BMA D:3080 , ILE E:100 , GLY E:101	BINDING SITE FOR RESIDUE MAN D 4080
29	DC2	SOFTWARE	NAG D:2080 , BMA D:3080	BINDING SITE FOR RESIDUE MAN D 4180
30	DC3	SOFTWARE	ASN E:49 , NAG E:2049	BINDING SITE FOR RESIDUE NAG E 1049
31	DC4	SOFTWARE	PRO E:54 , NAG E:1049 , BMA E:3049	BINDING SITE FOR RESIDUE NAG E 2049
32	DC5	SOFTWARE	NAG E:2049	BINDING SITE FOR RESIDUE BMA E 3049
33	DC6	SOFTWARE	ASN E:80 , TYR E:87 , GLN E:88 , NAG E:2080	BINDING SITE FOR RESIDUE NAG E 1080
34	DC7	SOFTWARE	VAL C:126 , GLN E:88 , ILE E:104 , NAG E:1080 , BMA E:3080 , MAN E:4180 , MAN E:5180	BINDING SITE FOR RESIDUE NAG E 2080
35	DC8	SOFTWARE	NAG E:2080 , MAN E:4080 , MAN E:4180	BINDING SITE FOR RESIDUE BMA E 3080
36	DC9	SOFTWARE	GLU A:8 , BMA E:3080	BINDING SITE FOR RESIDUE MAN E 4080
37	EC1	SOFTWARE	NAG E:2080 , BMA E:3080 , MAN E:5180 , MAN E:5280	BINDING SITE FOR RESIDUE MAN E 4180
38	EC2	SOFTWARE	TYR E:106 , NAG E:2080 , MAN E:4180	BINDING SITE FOR RESIDUE MAN E 5180
39	EC3	SOFTWARE	MAN E:4180 , MAN E:6280	BINDING SITE FOR RESIDUE MAN E 5280
40	EC4	SOFTWARE	MAN E:5280	BINDING SITE FOR RESIDUE MAN E 6280
41	EC5	SOFTWARE	ASN F:49 , THR F:51 , NAG F:2049	BINDING SITE FOR RESIDUE NAG F 1049
42	EC6	SOFTWARE	GLN E:75 , NAG F:1049 , BMA F:3049	BINDING SITE FOR RESIDUE NAG F 2049
43	EC7	SOFTWARE	NAG F:2049 , MAN F:4149 , MAN F:5149	BINDING SITE FOR RESIDUE BMA F 3049
44	EC8	SOFTWARE	BMA F:3049 , MAN F:5149 , MAN F:5249	BINDING SITE FOR RESIDUE MAN F 4149
45	EC9	SOFTWARE	BMA F:3049 , MAN F:4149	BINDING SITE FOR RESIDUE MAN F 5149
46	FC1	SOFTWARE	ILE C:92 , GLU C:103 , MAN F:4149	BINDING SITE FOR RESIDUE MAN F 5249
47	FC2	SOFTWARE	ASN F:80 , GLN F:88 , NAG F:2080	BINDING SITE FOR RESIDUE NAG F 1080
48	FC3	SOFTWARE	LYS B:110 , GLN F:88 , ILE F:104 , TYR F:106 , NAG F:1080 , BMA F:3080 , MAN F:4080	BINDING SITE FOR RESIDUE NAG F 2080
49	FC4	SOFTWARE	NAG F:2080 , MAN F:4080 , MAN F:4180	BINDING SITE FOR RESIDUE BMA F 3080
50	FC5	SOFTWARE	NAG C:1080 , NAG F:2080 , BMA F:3080	BINDING SITE FOR RESIDUE MAN F 4080
51	FC6	SOFTWARE	BMA F:3080	BINDING SITE FOR RESIDUE MAN F 4180
52	FC7	SOFTWARE	ASP A:57 , ASP A:58	BINDING SITE FOR RESIDUE CA A 1057
53	FC8	SOFTWARE	ASP B:57 , ASP B:58 , ARG C:48	BINDING SITE FOR RESIDUE CA B 2057
54	FC9	SOFTWARE	ASP C:57 , ASP C:58	BINDING SITE FOR RESIDUE CA C 3057
55	GC1	SOFTWARE	ASP D:57 , ASP D:58	BINDING SITE FOR RESIDUE CA D 4057
56	GC2	SOFTWARE	ASP E:57 , ASP E:58	BINDING SITE FOR RESIDUE CA E 5057
57	GC3	SOFTWARE	ASP F:57 , ASP F:58	BINDING SITE FOR RESIDUE CA F 6057
58	GC4	SOFTWARE	THR A:42 , HIS A:43	BINDING SITE FOR RESIDUE CL A 1042
59	GC5	SOFTWARE	THR B:42 , HIS B:43	BINDING SITE FOR RESIDUE CL B 2042
60	GC6	SOFTWARE	LEU D:40 , ALA D:41 , THR D:42	BINDING SITE FOR RESIDUE CL D 4042
61	GC7	SOFTWARE	THR E:42	BINDING SITE FOR RESIDUE CL E 5042
62	GC8	SOFTWARE	ALA F:41 , THR F:42 , HIS F:43	BINDING SITE FOR RESIDUE CL F 6042

Asymmetric Unit

No.	Residues
1	A:1	-	A:46
2	A:30	-	A:60
3	A:65	-	A:107
4	A:93	-	A:123
5	B:1	-	B:46
6	B:30	-	B:60
7	B:65	-	B:107
8	B:93	-	B:123
9	C:1	-	C:46
10	C:30	-	C:60
11	C:65	-	C:107
12	C:93	-	C:123
13	D:1	-	D:46
14	D:30	-	D:60
15	D:65	-	D:107
16	D:93	-	D:123
17	E:1	-	E:46
18	E:30	-	E:60
19	E:65	-	E:107
20	E:93	-	E:123
21	F:1	-	F:46
22	F:30	-	F:60
23	F:65	-	F:107
24	F:93	-	F:123

Asymmetric Unit

No.	Residues
1	Pro A:38	-	Pro A:39
2	Pro B:38	-	Pro B:39
3	Pro C:38	-	Pro C:39
4	Pro D:38	-	Pro D:39
5	Pro E:38	-	Pro E:39
6	Pro F:38	-	Pro F:39

Asymmetric Unit (2, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063656	C	35	Y	MCP_HUMAN	Disease (AHUS2)	121909591	A/B/C/D/E/F	C	1	Y
2	UniProt	VAR_026568	R	59	Q	MCP_HUMAN	Polymorphism	780693519	A/B/C/D/E/F	R	25	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063656	C	35	Y	MCP_HUMAN	Disease (AHUS2)	121909591	A	C	1	Y
2	UniProt	VAR_026568	R	59	Q	MCP_HUMAN	Polymorphism	780693519	A	R	25	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063656	C	35	Y	MCP_HUMAN	Disease (AHUS2)	121909591	B	C	1	Y
2	UniProt	VAR_026568	R	59	Q	MCP_HUMAN	Polymorphism	780693519	B	R	25	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063656	C	35	Y	MCP_HUMAN	Disease (AHUS2)	121909591	C	C	1	Y
2	UniProt	VAR_026568	R	59	Q	MCP_HUMAN	Polymorphism	780693519	C	R	25	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063656	C	35	Y	MCP_HUMAN	Disease (AHUS2)	121909591	D	C	1	Y
2	UniProt	VAR_026568	R	59	Q	MCP_HUMAN	Polymorphism	780693519	D	R	25	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063656	C	35	Y	MCP_HUMAN	Disease (AHUS2)	121909591	E	C	1	Y
2	UniProt	VAR_026568	R	59	Q	MCP_HUMAN	Polymorphism	780693519	E	R	25	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063656	C	35	Y	MCP_HUMAN	Disease (AHUS2)	121909591	F	C	1	Y
2	UniProt	VAR_026568	R	59	Q	MCP_HUMAN	Polymorphism	780693519	F	R	25	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	MCP_HUMAN	33-96 97-159 160-225 226-285	12	- A:63-125 B:63-125 C:63-125 D:63-125 E:63-125 F:63-125 A:126-126 B:126-126 C:126-126 D:126-126 E:126-126 F:126-126 -

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	MCP_HUMAN	33-96 97-159 160-225 226-285	2	- A:63-125 - - - - - A:126-126 - - - - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	MCP_HUMAN	33-96 97-159 160-225 226-285	2	- - B:63-125 - - - - - B:126-126 - - - - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	MCP_HUMAN	33-96 97-159 160-225 226-285	2	- - - C:63-125 - - - - - C:126-126 - - - -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	MCP_HUMAN	33-96 97-159 160-225 226-285	2	- - - - D:63-125 - - - - - D:126-126 - - -

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	MCP_HUMAN	33-96 97-159 160-225 226-285	2	- - - - - E:63-125 - - - - - E:126-126 - -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	MCP_HUMAN	33-96 97-159 160-225 226-285	2	- - - - - - F:63-125 - - - - - F:126-126 -

Asymmetric Unit (4, 24)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000358170	1a	ENSE00001225216	chr1:207925402-207925654	253	MCP_HUMAN	1-33	33	0	-	-
1.2	ENST00000358170	2	ENSE00001600549	chr1:207930359-207930547	189	MCP_HUMAN	33-96	64	6	A:1-62 B:1-62 C:1-62 D:1-62 E:1-62 F:1-62	62 62 62 62 62 62
1.3	ENST00000358170	3	ENSE00001725236	chr1:207930885-207930987	103	MCP_HUMAN	96-130	35	6	A:62-96 B:62-96 C:62-96 D:62-96 E:62-96 F:62-96	35 35 35 35 35 35
1.4a	ENST00000358170	4a	ENSE00001719360	chr1:207932984-207933069	86	MCP_HUMAN	130-159	30	6	A:96-125 B:96-125 C:96-125 D:96-125 E:96-125 F:96-125	30 30 30 30 30 30
1.4d	ENST00000358170	4d	ENSE00001167611	chr1:207934594-207934791	198	MCP_HUMAN	159-225	67	6	A:125-126 B:125-126 C:125-126 D:125-126 E:125-126 F:125-126	2 2 2 2 2 2
1.5b	ENST00000358170	5b	ENSE00001167601	chr1:207940358-207940540	183	MCP_HUMAN	225-286	62	0	-	-
1.5e	ENST00000358170	5e	ENSE00001320886	chr1:207940952-207940996	45	MCP_HUMAN	286-301	16	0	-	-
1.5f	ENST00000358170	5f	ENSE00000792032	chr1:207941124-207941168	45	MCP_HUMAN	301-316	16	0	-	-
1.5j	ENST00000358170	5j	ENSE00001167583	chr1:207943666-207943707	42	MCP_HUMAN	316-330	15	0	-	-
1.6a	ENST00000358170	6a	ENSE00001167577	chr1:207956637-207956675	39	MCP_HUMAN	330-343	14	0	-	-
1.7	ENST00000358170	7	ENSE00001167569	chr1:207958416-207958451	36	MCP_HUMAN	343-355	13	0	-	-
1.8a	ENST00000358170	8a	ENSE00001167565	chr1:207958964-207959027	64	MCP_HUMAN	355-376	22	0	-	-
1.9b	ENST00000358170	9b	ENSE00001162717	chr1:207963598-207963690	93	MCP_HUMAN	376-392	17	0	-	-
1.10e	ENST00000358170	10e	ENSE00001643557	chr1:207966864-207968858	1995	MCP_HUMAN	-	0	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:126
 aligned with MCP_HUMAN | P15529 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
            MCP_HUMAN    35 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 160
               SCOP domains d1ckla1 A:1-62 CD46 (membrane cofactor protein, MCP)          d1ckla2 A:63-126 CD46 (membrane cofactor protein, MCP)           SCOP domains
               CATH domains 1cklA01 A:1-62 Complement Module, domain 1                    1cklA02 A:63-126 Complement Module, domain 1                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eee............eeeeee...eee......eee..............eee........................eeee.............eeeeeee..eee........... Sec.struct. author
                 SAPs(SNPs) Y-----------------------Q----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 33-96                                  SUSHI  PDB: A:63-125 UniProt: 97-159                           S PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:1-62 UniProt: 33-96 [INCOMPLETE]             ---------------------------------Exon 1.4a  PDB: A:96-125      - Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: A:62-96             ----------------------------1. Transcript 1 (2)
                 1ckl A   1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain B from PDB  Type:PROTEIN  Length:126
 aligned with MCP_HUMAN | P15529 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
            MCP_HUMAN    35 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 160
               SCOP domains d1cklb1 B:1-62 CD46 (membrane cofactor protein, MCP)          d1cklb2 B:63-126 CD46 (membrane cofactor protein, MCP)           SCOP domains
               CATH domains 1cklB01 B:1-62 Complement Module, domain 1                    1cklB02 B:63-126 Complement Module, domain 1                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eee............eeeeee............eee...........hhh..............eeeeehhh......eeeeee...eeee...eeeeeee..eeee.....eeee. Sec.struct. author
                 SAPs(SNPs) Y-----------------------Q----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 33-96                                  SUSHI  PDB: B:63-125 UniProt: 97-159                           S PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:1-62 UniProt: 33-96 [INCOMPLETE]             ---------------------------------Exon 1.4a  PDB: B:96-125      - Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: B:62-96             ----------------------------1. Transcript 1 (2)
                 1ckl B   1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain C from PDB  Type:PROTEIN  Length:126
 aligned with MCP_HUMAN | P15529 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
            MCP_HUMAN    35 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 160
               SCOP domains d1cklc1 C:1-62 CD46 (membrane cofactor protein, MCP)          d1cklc2 C:63-126 CD46 (membrane cofactor protein, MCP)           SCOP domains
               CATH domains 1cklC01 C:1-62 Complement Module, domain 1                    1cklC02 C:63-126 Complement Module, domain 1                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eee............eeeeee............eee.............................eee............eee...............eee..eee........... Sec.struct. author
                 SAPs(SNPs) Y-----------------------Q----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 33-96                                  SUSHI  PDB: C:63-125 UniProt: 97-159                           S PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:1-62 UniProt: 33-96 [INCOMPLETE]             ---------------------------------Exon 1.4a  PDB: C:96-125      - Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: C:62-96             ----------------------------1. Transcript 1 (2)
                 1ckl C   1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain D from PDB  Type:PROTEIN  Length:126
 aligned with MCP_HUMAN | P15529 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
            MCP_HUMAN    35 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 160
               SCOP domains d1ckld1 D:1-62 CD46 (membrane cofactor protein, MCP)          d1ckld2 D:63-126 CD46 (membrane cofactor protein, MCP)           SCOP domains
               CATH domains 1cklD01 D:1-62 Complement Module, domain 1                    1cklD02 D:63-126 Complement Module, domain 1                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eee............eeeeee............eee..............................eeehhh......eeee......eee...eeeeeee..eeee.....eee.. Sec.struct. author
                 SAPs(SNPs) Y-----------------------Q----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 33-96                                  SUSHI  PDB: D:63-125 UniProt: 97-159                           S PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:1-62 UniProt: 33-96 [INCOMPLETE]             ---------------------------------Exon 1.4a  PDB: D:96-125      - Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: D:62-96             ----------------------------1. Transcript 1 (2)
                 1ckl D   1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain E from PDB  Type:PROTEIN  Length:126
 aligned with MCP_HUMAN | P15529 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
            MCP_HUMAN    35 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 160
               SCOP domains d1ckle1 E:1-62 CD46 (membrane cofactor protein, MCP)          d1ckle2 E:63-126 CD46 (membrane cofactor protein, MCP)           SCOP domains
               CATH domains 1cklE01 E:1-62 Complement Module, domain 1                    1cklE02 E:63-126 Complement Module, domain 1                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eee............eeeeee...eee......eee...........hhheee................hhh.....eee........eee....eeeee....eee.....eee.. Sec.struct. author
                 SAPs(SNPs) Y-----------------------Q----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 33-96                                  SUSHI  PDB: E:63-125 UniProt: 97-159                           S PROSITE
           Transcript 1 (1) Exon 1.2  PDB: E:1-62 UniProt: 33-96 [INCOMPLETE]             ---------------------------------Exon 1.4a  PDB: E:96-125      - Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: E:62-96             ----------------------------1. Transcript 1 (2)
                 1ckl E   1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain F from PDB  Type:PROTEIN  Length:126
 aligned with MCP_HUMAN | P15529 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
            MCP_HUMAN    35 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 160
               SCOP domains d1cklf1 F:1-62 CD46 (membrane cofactor protein, MCP)          d1cklf2 F:63-126 CD46 (membrane cofactor protein, MCP)           SCOP domains
               CATH domains 1cklF01 F:1-62 Complement Module, domain 1                    1cklF02 F:63-126 Complement Module, domain 1                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eee............eeeeee...eee......eee...........hhheee...........eeee.hhh.....eeeeeee....eee...eeeeee....eee.....eee.. Sec.struct. author
                 SAPs(SNPs) Y-----------------------Q----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 33-96                                  SUSHI  PDB: F:63-125 UniProt: 97-159                           S PROSITE
           Transcript 1 (1) Exon 1.2  PDB: F:1-62 UniProt: 33-96 [INCOMPLETE]             ---------------------------------Exon 1.4a  PDB: F:96-125      - Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: F:62-96             ----------------------------1. Transcript 1 (2)
                 1ckl F   1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Small proteins (3458)

Fold: Complement control module/SCR domain (70)

Superfamily: Complement control module/SCR domain (70)

Family: Complement control module/SCR domain (67)

Protein domain: CD46 (membrane cofactor protein, MCP) (2)

Human (Homo sapiens) [TaxId: 9606] (2)

1a	d1ckla1	A:1-62
1b	d1ckld1	D:1-62
1c	d1ckld2	D:63-126
1d	d1ckle1	E:1-62
1e	d1ckle2	E:63-126
1f	d1cklf1	F:1-62
1g	d1cklf2	F:63-126
1h	d1ckla2	A:63-126
1i	d1cklb1	B:1-62
1j	d1cklb2	B:63-126
1k	d1cklc1	C:1-62
1l	d1cklc2	C:63-126

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Ribbon (789)

Topology: Complement Module; domain 1 (62)

Homologous Superfamily: Complement Module, domain 1 (60)

Human (Homo sapiens) (46)

1a	1cklA01	A:1-62
1b	1cklB01	B:1-62
1c	1cklC01	C:1-62
1d	1cklD01	D:1-62
1e	1cklE01	E:1-62
1f	1cklF01	F:1-62
1g	1cklA02	A:63-126
1h	1cklB02	B:63-126
1i	1cklC02	C:63-126
1j	1cklD02	D:63-126
1k	1cklE02	E:63-126
1l	1cklF02	F:63-126

(no "Pfam Domain" information available for 1CKL)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (MCP_HUMAN | P15529)

molecular function
	GO:0045296	cadherin binding	Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
	GO:0001848	complement binding	Interacting selectively and non-covalently with any component or product of the complement cascade.
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0004857	enzyme inhibitor activity	Binds to and stops, prevents or reduces the activity of an enzyme.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
	GO:0001618	virus receptor activity	Combining with a virus component and mediating entry of the virus into the cell.
biological process
	GO:0002456	T cell mediated immunity	Any process involved in the carrying out of an immune response by a T cell.
	GO:0002250	adaptive immune response	An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).
	GO:0006958	complement activation, classical pathway	Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0032613	interleukin-10 production	The appearance of interleukin-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
	GO:0043086	negative regulation of catalytic activity	Any process that stops or reduces the activity of an enzyme.
	GO:0045916	negative regulation of complement activation	Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation.
	GO:0010629	negative regulation of gene expression	Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0042102	positive regulation of T cell proliferation	Any process that activates or increases the rate or extent of T cell proliferation.
	GO:0010628	positive regulation of gene expression	Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0032733	positive regulation of interleukin-10 production	Any process that activates or increases the frequency, rate, or extent of interleukin-10 production.
	GO:0043382	positive regulation of memory T cell differentiation	Any process that activates or increases the frequency, rate or extent of memory T cell differentiation.
	GO:0045591	positive regulation of regulatory T cell differentiation	Any process that activates or increases the frequency, rate or extent of differentiation of regulatory T cells.
	GO:0071636	positive regulation of transforming growth factor beta production	Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0008593	regulation of Notch signaling pathway	Any process that modulates the frequency, rate or extent of the Notch signaling pathway.
	GO:0030449	regulation of complement activation	Any process that modulates the frequency, rate or extent of complement activation.
	GO:0035581	sequestering of extracellular ligand from receptor	The process of binding or confining an extracellular signaling ligand, such that the ligand is unable to bind to its cell surface receptor.
	GO:0007338	single fertilization	The union of male and female gametes to form a zygote.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0001669	acrosomal vesicle	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome.
	GO:0016323	basolateral plasma membrane	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0002079	inner acrosomal membrane	The acrosomal membrane region that underlies the acrosomal vesicle and is located toward the sperm nucleus. This region is responsible for molecular interactions allowing the sperm to penetrate the zona pellucida and fuses with the egg plasma membrane.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	1ckl
		Family and Domain Information	:	ProDom \| SYSTERS
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	MCP_HUMAN \| P15529
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	612922
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	MCP_HUMAN \| P15529
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	MCP_HUMAN \| P15529	:	1hr4 2o39 3inb 3l89 3o8e 5fo8

(no "Related Entries Specified in the PDB File" available for 1CKL)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 62)

Sites (62, 62)

SS Bonds (24, 24)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 12)

PROSITE Motifs (1, 12)

Exons (4, 24)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 12)

CATH Domains (1, 12)

Pfam Domains (0, 0)

Gene Ontology (42, 42)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File