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Getting 'Biological Unit' information from database.
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1CKL
Biol. Unit 2
Info
Asym.Unit (152 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (27 KB)
Biol.Unit 3 (26 KB)
Biol.Unit 4 (27 KB)
Biol.Unit 5 (28 KB)
Biol.Unit 6 (28 KB)
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(1)
Title
:
N-TERMINAL TWO DOMAINS OF HUMAN CD46 (MEMBRANE COFACTOR PROTEIN, MCP)
Authors
:
J. Casasnovas, M. Larvie, T. Stehle
Date
:
22 Apr 99 (Deposition) - 11 Jun 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Virus Receptor, Complement Cofactor, Short Consensus Repeat, Scr, Measles Virus, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Casasnovas, M. Larvie, T. Stehle
Crystal Structure Of Two Cd46 Domains Reveals An Extended Measles Virus-Binding Surface.
Embo J. V. 18 2911 1999
[
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
4k: ALPHA-D-MANNOSE (MANk)
4l: ALPHA-D-MANNOSE (MANl)
4m: ALPHA-D-MANNOSE (MANm)
4n: ALPHA-D-MANNOSE (MANn)
4o: ALPHA-D-MANNOSE (MANo)
4p: ALPHA-D-MANNOSE (MANp)
4q: ALPHA-D-MANNOSE (MANq)
4r: ALPHA-D-MANNOSE (MANr)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: BC4 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: FC3 (SOFTWARE)
09: FC8 (SOFTWARE)
10: GC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC4
SOFTWARE
GLN A:75 , VAL A:77 , ASN B:49 , NAG B:2049
BINDING SITE FOR RESIDUE NAG B 1049
02
BC5
SOFTWARE
NAG B:1049 , BMA B:3049
BINDING SITE FOR RESIDUE NAG B 2049
03
BC6
SOFTWARE
NAG B:2049
BINDING SITE FOR RESIDUE BMA B 3049
04
BC7
SOFTWARE
ALA B:79 , ASN B:80 , TYR B:87 , NAG B:2080 , VAL F:126
BINDING SITE FOR RESIDUE NAG B 1080
05
BC8
SOFTWARE
GLN B:88 , NAG B:1080 , BMA B:3080
BINDING SITE FOR RESIDUE NAG B 2080
06
BC9
SOFTWARE
NAG B:2080
BINDING SITE FOR RESIDUE BMA B 3080
07
CC1
SOFTWARE
PRO B:78 , ASN C:49 , THR C:51 , NAG C:2049
BINDING SITE FOR RESIDUE NAG C 1049
08
FC3
SOFTWARE
LYS B:110 , GLN F:88 , ILE F:104 , TYR F:106 , NAG F:1080 , BMA F:3080 , MAN F:4080
BINDING SITE FOR RESIDUE NAG F 2080
09
FC8
SOFTWARE
ASP B:57 , ASP B:58 , ARG C:48
BINDING SITE FOR RESIDUE CA B 2057
10
GC5
SOFTWARE
THR B:42 , HIS B:43
BINDING SITE FOR RESIDUE CL B 2042
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_063656 (C1Y, chain B, )
2: VAR_026568 (R25Q, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063656
C
35
Y
MCP_HUMAN
Disease (AHUS2)
---
B
C
1
Y
2
UniProt
VAR_026568
R
59
Q
MCP_HUMAN
Polymorphism
---
B
R
25
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SUSHI (B:63-125,B:126-126)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
MCP_HUMAN
33-96
97-159
160-225
226-285
2
-
-
B:63-125
-
-
-
-
-
B:126-126
-
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1ckla1 (A:1-62)
1b: SCOP_d1ckld1 (D:1-62)
1c: SCOP_d1ckld2 (D:63-126)
1d: SCOP_d1ckle1 (E:1-62)
1e: SCOP_d1ckle2 (E:63-126)
1f: SCOP_d1cklf1 (F:1-62)
1g: SCOP_d1cklf2 (F:63-126)
1h: SCOP_d1ckla2 (A:63-126)
1i: SCOP_d1cklb1 (B:1-62)
1j: SCOP_d1cklb2 (B:63-126)
1k: SCOP_d1cklc1 (C:1-62)
1l: SCOP_d1cklc2 (C:63-126)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
CD46 (membrane cofactor protein, MCP)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1ckla1
A:1-62
1b
d1ckld1
D:1-62
1c
d1ckld2
D:63-126
1d
d1ckle1
E:1-62
1e
d1ckle2
E:63-126
1f
d1cklf1
F:1-62
1g
d1cklf2
F:63-126
1h
d1ckla2
A:63-126
1i
d1cklb1
B:1-62
1j
d1cklb2
B:63-126
1k
d1cklc1
C:1-62
1l
d1cklc2
C:63-126
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1cklA01 (A:1-62)
1b: CATH_1cklB01 (B:1-62)
1c: CATH_1cklC01 (C:1-62)
1d: CATH_1cklD01 (D:1-62)
1e: CATH_1cklE01 (E:1-62)
1f: CATH_1cklF01 (F:1-62)
1g: CATH_1cklA02 (A:63-126)
1h: CATH_1cklB02 (B:63-126)
1i: CATH_1cklC02 (C:63-126)
1j: CATH_1cklD02 (D:63-126)
1k: CATH_1cklE02 (E:63-126)
1l: CATH_1cklF02 (F:63-126)
View:
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human (Homo sapiens)
(46)
1a
1cklA01
A:1-62
1b
1cklB01
B:1-62
1c
1cklC01
C:1-62
1d
1cklD01
D:1-62
1e
1cklE01
E:1-62
1f
1cklF01
F:1-62
1g
1cklA02
A:63-126
1h
1cklB02
B:63-126
1i
1cklC02
C:63-126
1j
1cklD02
D:63-126
1k
1cklE02
E:63-126
1l
1cklF02
F:63-126
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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