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Getting 'Biological Unit' information from database.
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Getting 'PROSITE' information from database.
1CKL
Biol. Unit 3
Info
Asym.Unit (152 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (27 KB)
Biol.Unit 3 (26 KB)
Biol.Unit 4 (27 KB)
Biol.Unit 5 (28 KB)
Biol.Unit 6 (28 KB)
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(1)
Title
:
N-TERMINAL TWO DOMAINS OF HUMAN CD46 (MEMBRANE COFACTOR PROTEIN, MCP)
Authors
:
J. Casasnovas, M. Larvie, T. Stehle
Date
:
22 Apr 99 (Deposition) - 11 Jun 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Virus Receptor, Complement Cofactor, Short Consensus Repeat, Scr, Measles Virus, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Casasnovas, M. Larvie, T. Stehle
Crystal Structure Of Two Cd46 Domains Reveals An Extended Measles Virus-Binding Surface.
Embo J. V. 18 2911 1999
[
close entry info
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
4k: ALPHA-D-MANNOSE (MANk)
4l: ALPHA-D-MANNOSE (MANl)
4m: ALPHA-D-MANNOSE (MANm)
4n: ALPHA-D-MANNOSE (MANn)
4o: ALPHA-D-MANNOSE (MANo)
4p: ALPHA-D-MANNOSE (MANp)
4q: ALPHA-D-MANNOSE (MANq)
4r: ALPHA-D-MANNOSE (MANr)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
-1
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC3 (SOFTWARE)
07: CC4 (SOFTWARE)
08: DC7 (SOFTWARE)
09: FC1 (SOFTWARE)
10: FC5 (SOFTWARE)
11: FC8 (SOFTWARE)
12: FC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
NAG A:1049 , BMA A:3049 , GLN C:75 , VAL C:77
BINDING SITE FOR RESIDUE NAG A 2049
02
AC3
SOFTWARE
NAG A:2049 , MAN A:4049 , MAN A:4149 , GLN C:75
BINDING SITE FOR RESIDUE BMA A 3049
03
AC4
SOFTWARE
BMA A:3049 , MAN A:5049 , GLU C:95
BINDING SITE FOR RESIDUE MAN A 4049
04
CC1
SOFTWARE
PRO B:78 , ASN C:49 , THR C:51 , NAG C:2049
BINDING SITE FOR RESIDUE NAG C 1049
05
CC2
SOFTWARE
NAG C:1049
BINDING SITE FOR RESIDUE NAG C 2049
06
CC3
SOFTWARE
ASN C:80 , GLY C:86 , NAG C:2080 , MAN F:4080
BINDING SITE FOR RESIDUE NAG C 1080
07
CC4
SOFTWARE
ALA C:79 , GLN C:88 , HIS C:90 , NAG C:1080
BINDING SITE FOR RESIDUE NAG C 2080
08
DC7
SOFTWARE
VAL C:126 , GLN E:88 , ILE E:104 , NAG E:1080 , BMA E:3080 , MAN E:4180 , MAN E:5180
BINDING SITE FOR RESIDUE NAG E 2080
09
FC1
SOFTWARE
ILE C:92 , GLU C:103 , MAN F:4149
BINDING SITE FOR RESIDUE MAN F 5249
10
FC5
SOFTWARE
NAG C:1080 , NAG F:2080 , BMA F:3080
BINDING SITE FOR RESIDUE MAN F 4080
11
FC8
SOFTWARE
ASP B:57 , ASP B:58 , ARG C:48
BINDING SITE FOR RESIDUE CA B 2057
12
FC9
SOFTWARE
ASP C:57 , ASP C:58
BINDING SITE FOR RESIDUE CA C 3057
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_063656 (C1Y, chain C, )
2: VAR_026568 (R25Q, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063656
C
35
Y
MCP_HUMAN
Disease (AHUS2)
---
C
C
1
Y
2
UniProt
VAR_026568
R
59
Q
MCP_HUMAN
Polymorphism
---
C
R
25
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SUSHI (C:63-125,C:126-126)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
MCP_HUMAN
33-96
97-159
160-225
226-285
2
-
-
-
C:63-125
-
-
-
-
-
C:126-126
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1ckla1 (A:1-62)
1b: SCOP_d1ckld1 (D:1-62)
1c: SCOP_d1ckld2 (D:63-126)
1d: SCOP_d1ckle1 (E:1-62)
1e: SCOP_d1ckle2 (E:63-126)
1f: SCOP_d1cklf1 (F:1-62)
1g: SCOP_d1cklf2 (F:63-126)
1h: SCOP_d1ckla2 (A:63-126)
1i: SCOP_d1cklb1 (B:1-62)
1j: SCOP_d1cklb2 (B:63-126)
1k: SCOP_d1cklc1 (C:1-62)
1l: SCOP_d1cklc2 (C:63-126)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
CD46 (membrane cofactor protein, MCP)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1ckla1
A:1-62
1b
d1ckld1
D:1-62
1c
d1ckld2
D:63-126
1d
d1ckle1
E:1-62
1e
d1ckle2
E:63-126
1f
d1cklf1
F:1-62
1g
d1cklf2
F:63-126
1h
d1ckla2
A:63-126
1i
d1cklb1
B:1-62
1j
d1cklb2
B:63-126
1k
d1cklc1
C:1-62
1l
d1cklc2
C:63-126
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1cklA01 (A:1-62)
1b: CATH_1cklB01 (B:1-62)
1c: CATH_1cklC01 (C:1-62)
1d: CATH_1cklD01 (D:1-62)
1e: CATH_1cklE01 (E:1-62)
1f: CATH_1cklF01 (F:1-62)
1g: CATH_1cklA02 (A:63-126)
1h: CATH_1cklB02 (B:63-126)
1i: CATH_1cklC02 (C:63-126)
1j: CATH_1cklD02 (D:63-126)
1k: CATH_1cklE02 (E:63-126)
1l: CATH_1cklF02 (F:63-126)
View:
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Classes
(
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(
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human (Homo sapiens)
(46)
1a
1cklA01
A:1-62
1b
1cklB01
B:1-62
1c
1cklC01
C:1-62
1d
1cklD01
D:1-62
1e
1cklE01
E:1-62
1f
1cklF01
F:1-62
1g
1cklA02
A:63-126
1h
1cklB02
B:63-126
1i
1cklC02
C:63-126
1j
1cklD02
D:63-126
1k
1cklE02
E:63-126
1l
1cklF02
F:63-126
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
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)
Protein
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All Atoms
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Protein & NOT Site
Protein & NOT PROSITE
Chain C
Asymmetric Unit 1
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