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(-) Description

Title :  STRUCTURE OF THE MEASLES VIRUS HEMAGGLUTININ BOUND TO THE CD46 RECEPTOR
 
Authors :  C. Santiago, M. L. Celma, T. Stehle, J. M. Casasnovas
Date :  12 Aug 09  (Deposition) - 22 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Measles, Beta Propeller, Envelope Protein, Hemagglutinin, Viral Protein. Membrane Cofactor Protein, Mcp, Cd46, Virus Receptor Complex, Scr, Complement Control Protein, Immune System Complex, Membrane, Transmembrane, Virion, Cell Membrane, Glycoprotein, Host- Virus Interaction, Signal-Anchor, Complement Pathway, Disease Mutation, Disulfide Bond, Fertilization, Immune Response, Innate Immunity, Phosphoprotein, Sushi, Viral Protein, Immune System, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Santiago, M. L. Celma, T. Stehle, J. M. Casasnovas
Structure Of The Measles Virus Hemagglutinin Bound To The Cd46 Receptor
Nat. Struct. Mol. Biol. V. 17 124 2010
PubMed-ID: 20010840  |  Reference-DOI: 10.1038/NSMB.1726

(-) Compounds

Molecule 1 - HEMAGGLUTININ GLYCOPROTEIN
    ChainsA, B
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System Cell LineOVARY CELLS
    Expression System CommonCHINESE HAMSTER
    Expression System PlasmidPBJ5-GS
    Expression System StrainCHO-LEC 3281
    Expression System Taxid10029
    Expression System Vector TypePLASMID
    FragmentHEAD DOMAIN, RESIDUES 179-617
    GeneH
    Organism CommonVIRUSES
    Organism ScientificMEASLES VIRUS STRAIN EDMONSTON
    Organism Taxid11235
    StrainEDMONSTON
 
Molecule 2 - MEMBRANE COFACTOR PROTEIN
    ChainsC, D
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System Cell LineOVARY CELLS
    Expression System CommonCHINESE HAMSTER
    Expression System PlasmidPBJ5-GS
    Expression System StrainCHO-LEC 3281
    Expression System Taxid10029
    Expression System Vector TypePLASMID
    FragmentSUSHI DOMAINS 1 AND 2, RESIDUES 35-160
    GeneCD46, MCP, MIC10
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTROPHOBLAST LEUKOCYTE COMMON ANTIGEN, TLX

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO43Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:199 , ASN A:200 , ARG B:212BINDING SITE FOR RESIDUE NAG A 1200
2AC2SOFTWAREASN A:215 , SER A:217 , GLU A:235 , ASP A:283 , GLY A:592 , HIS A:593BINDING SITE FOR RESIDUE NAG A 1215
3AC3SOFTWARELYS A:328 , HOH A:618 , ARG B:261BINDING SITE FOR RESIDUE SO4 A 3
4AC4SOFTWAREASN B:200BINDING SITE FOR RESIDUE NAG B 1200
5AC5SOFTWAREASN B:215 , SER B:217 , GLU B:235 , ASP B:283BINDING SITE FOR RESIDUE NAG B 1215
6AC6SOFTWAREARG A:261 , SO4 B:2 , LYS B:328BINDING SITE FOR RESIDUE SO4 B 1
7AC7SOFTWAREARG A:261 , SO4 B:1 , TYR B:275 , GLU B:277BINDING SITE FOR RESIDUE SO4 B 2
8AC8SOFTWARELYS B:488 , ASN C:80 , GLN C:88BINDING SITE FOR RESIDUE NAG C 1080
9AC9SOFTWARELYS A:488 , ASN D:80 , GLN D:88BINDING SITE FOR RESIDUE NAG D 1080

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:287 -A:300
2A:381 -A:494
3A:386 -A:394
4A:570 -A:579
5B:188 -B:606
6B:287 -B:300
7B:381 -B:494
8B:386 -B:394
9B:570 -B:579
10C:1 -C:46
11C:30 -C:60
12C:65 -C:107
13C:93 -C:123
14D:1 -D:46
15D:30 -D:60
16D:65 -D:107
17D:93 -D:123

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Lys B:185 -Gly B:186
2Gly B:190 -Pro B:191
3Pro C:38 -Pro C:39
4Glu D:21 -Ile D:22
5Asp D:27 -Tyr D:28
6Pro D:38 -Pro D:39

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 4)

Asymmetric/Biological Unit (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_063656C35YMCP_HUMANDisease (AHUS2)121909591C/DC1Y
2UniProtVAR_026568R59QMCP_HUMANPolymorphism780693519C/DR25Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.MCP_HUMAN33-96
97-159
 
160-225
 
226-285
  4-
C:63-125
D:63-125
C:126-126
D:126-126
-

(-) Exons   (4, 8)

Asymmetric/Biological Unit (4, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003581701aENSE00001225216chr1:207925402-207925654253MCP_HUMAN1-33330--
1.2ENST000003581702ENSE00001600549chr1:207930359-207930547189MCP_HUMAN33-96642C:1-62
D:1-62
62
62
1.3ENST000003581703ENSE00001725236chr1:207930885-207930987103MCP_HUMAN96-130352C:62-96
D:62-96
35
35
1.4aENST000003581704aENSE00001719360chr1:207932984-20793306986MCP_HUMAN130-159302C:96-125
D:96-125
30
30
1.4dENST000003581704dENSE00001167611chr1:207934594-207934791198MCP_HUMAN159-225672C:125-126
D:125-126
2
2
1.5bENST000003581705bENSE00001167601chr1:207940358-207940540183MCP_HUMAN225-286620--
1.5eENST000003581705eENSE00001320886chr1:207940952-20794099645MCP_HUMAN286-301160--
1.5fENST000003581705fENSE00000792032chr1:207941124-20794116845MCP_HUMAN301-316160--
1.5jENST000003581705jENSE00001167583chr1:207943666-20794370742MCP_HUMAN316-330150--
1.6aENST000003581706aENSE00001167577chr1:207956637-20795667539MCP_HUMAN330-343140--
1.7ENST000003581707ENSE00001167569chr1:207958416-20795845136MCP_HUMAN343-355130--
1.8aENST000003581708aENSE00001167565chr1:207958964-20795902764MCP_HUMAN355-376220--
1.9bENST000003581709bENSE00001162717chr1:207963598-20796369093MCP_HUMAN376-392170--
1.10eENST0000035817010eENSE00001643557chr1:207966864-2079688581995MCP_HUMAN-00--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:389
 aligned with HEMA_MEASE | P08362 from UniProtKB/Swiss-Prot  Length:617

    Alignment length:410
                                   202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602
           HEMA_MEASE   193 TIRGQFSNMSLSLLDLYLGRGYNVSSIVTMTSQGMYGGTYLVEKPNLSSKRSELSQLSMYRVFEVGVIRNPGLGAPVFHMTNYLEQPVSNDLSNCMVALGELKLAALCHGEDSITIPYQGSGKGVSFQLVKLGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDKLRMETCFQQACKGKIQALCENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFNVPIKEAGEDCHAPTYLPAEVDGDVKLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVYSPSRSFSYFYPFRLPIKGVPIELQVECFTWDQKLWCRHFCVLADSESGGHITHSGMEGM 602
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee....hhhhhhhhh...eeeeeeeee..eeeeeeeee....----------.eeeeeeeeeee.......eeeeeeeeeee.....eeeeeee...eeeeeeee..eee...-----..eeeeeeee..........eeeee.......eee....eeee...eeeeeeee...hhhhhhhhhhhhhhh....hhhhh..hhhhhh....eeeeeeee........eeeeee...........eeee.....eeeeee.........eeeeee.....eeeeee.eee........eee..........-.ee............eeeeee.......eeeeeeee..eeeeeeee.......eeeeeeeeeeee..eeeeeeeeeee-----..eeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3inb A 193 TIRGQFSNMSLSLLDLYLGRGYNVSSIVTMTSQGMYGGTYLVEKPNL----------SMYRVFEVGVIRNPGLGAPVFHMTNYLEQPVSNDLSNCMVALGELKLAALCHGEDSITIPY-----GVSFQLVKLGVWKSPADMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDKLRMETCFQQACKGKIQTLCENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFTVPIKEAGEDCHAPTYLPAEVDGD-KLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVYSPGRSFSYFYPFRLPIKGVPIELQVECFTWDQKLWCRHFCVLA-----GHITHSGMVGM 602
                                   202       212       222       232      |  -       252       262       272       282       292       302       | -   |   322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502    | |512       522       532       542       552       562       572       582   |   592       602
                                                                        239        250                                                         310   316                                                                                                                                                                                            507 |                                                                          586   592          
                                                                                                                                                                                                                                                                                                                                                      509                                                                                             

Chain B from PDB  Type:PROTEIN  Length:403
 aligned with HEMA_MEASE | P08362 from UniProtKB/Swiss-Prot  Length:617

    Alignment length:423
                                   193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603   
           HEMA_MEASE   184 SKGNCSGPTTIRGQFSNMSLSLLDLYLGRGYNVSSIVTMTSQGMYGGTYLVEKPNLSSKRSELSQLSMYRVFEVGVIRNPGLGAPVFHMTNYLEQPVSNDLSNCMVALGELKLAALCHGEDSITIPYQGSGKGVSFQLVKLGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDKLRMETCFQQACKGKIQALCENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFNVPIKEAGEDCHAPTYLPAEVDGDVKLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVYSPSRSFSYFYPFRLPIKGVPIELQVECFTWDQKLWCRHFCVLADSESGGHITHSGMEGMGVSC 606
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhh...eeeeeeeee..eeeeeeeeee...--------..eeeeeeeeeeee.......eeeeeeeeeee.....eeeeeee...eeeeeeee..eee...-----..eeeeeeee..........eeeee.......eee....eeee...eeeeeeee...hhhhhhhhhhhhhhh....hhhhh..hhhhhh....eeeeeeee........eeeeee...........eeee.....eeeeee.........eeeeee.....eeeeee.eee........eee..........-.ee............eeeeeee......eeeeeeee..eeeeeeee.......eeeeeeeeeeee..eeeeeeeeeee.------.eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3inb B 184 SKGNCSGPTTIRGQFSNMSLSLLDLYLGRGYNVSSIVTMTSQGMYGGTYLVEKPNL--------QLSMYRVFEVGVIRNPGLGAPVFHMTNYLEQPVSNDLSNCMVALGELKLAALCHGEDSITIPY-----GVSFQLVKLGVWKSPADMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDKLRMETCFQQACKGKIQTLCENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFTVPIKEAGEDCHAPTYLPAEVDGD-KLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVYSPGRSFSYFYPFRLPIKGVPIELQVECFTWDQKLWCRHFCVLAD------ITHSGMVGMGVSC 606
                                   193       203       213       223       233     |   -    |  253       263       273       283       293       303      |  -  |    323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503   | | 513       523       533       543       553       563       573       583   |     -|      603   
                                                                                 239      248                                                           310   316                                                                                                                                                                                            507 |                                                                           587    594            
                                                                                                                                                                                                                                                                                                                                                               509                                                                                                 

Chain C from PDB  Type:PROTEIN  Length:126
 aligned with MCP_HUMAN | P15529 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
            MCP_HUMAN    35 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 160
               SCOP domains d3inbc1 C:1-62 automated matches                              d3inbc2 C:63-126 automated matches                               SCOP domains
               CATH domains 3inbC01 C:1-62 Complement Module, domain 1                    3inbC02 C:63-126 Complement Module, domain 1                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........................eee......eee......eee..............eee.........................eee.............eee.................... Sec.struct. author
                 SAPs(SNPs) Y-----------------------Q----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 33-96                                  SUSHI  PDB: C:63-125 UniProt: 97-159                           S PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:1-62 UniProt: 33-96 [INCOMPLETE]             ---------------------------------Exon 1.4a  PDB: C:96-125      - Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: C:62-96             ----------------------------1. Transcript 1 (2)
                 3inb C   1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120      

Chain D from PDB  Type:PROTEIN  Length:126
 aligned with MCP_HUMAN | P15529 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
            MCP_HUMAN    35 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 160
               SCOP domains d3inbd1 D:1-62 automated matches                              d3inbd2 D:63-126 automated matches                               SCOP domains
               CATH domains 3inbD01 D:1-62 Complement Module, domain 1                    3inbD02 D:63-126 Complement Module, domain 1                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................................eee........ee.....ee......eee.........................eee.............eee.................... Sec.struct. author
                 SAPs(SNPs) Y-----------------------Q----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 33-96                                  SUSHI  PDB: D:63-125 UniProt: 97-159                           S PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:1-62 UniProt: 33-96 [INCOMPLETE]             ---------------------------------Exon 1.4a  PDB: D:96-125      - Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: D:62-96             ----------------------------1. Transcript 1 (2)
                 3inb D   1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3INB)

(-) Gene Ontology  (50, 54)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (HEMA_MEASE | P08362)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

Chain C,D   (MCP_HUMAN | P15529)
molecular function
    GO:0045296    cadherin binding    Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
    GO:0001848    complement binding    Interacting selectively and non-covalently with any component or product of the complement cascade.
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0004857    enzyme inhibitor activity    Binds to and stops, prevents or reduces the activity of an enzyme.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
    GO:0001618    virus receptor activity    Combining with a virus component and mediating entry of the virus into the cell.
biological process
    GO:0002456    T cell mediated immunity    Any process involved in the carrying out of an immune response by a T cell.
    GO:0002250    adaptive immune response    An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0032613    interleukin-10 production    The appearance of interleukin-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
    GO:0043086    negative regulation of catalytic activity    Any process that stops or reduces the activity of an enzyme.
    GO:0045916    negative regulation of complement activation    Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation.
    GO:0010629    negative regulation of gene expression    Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0042102    positive regulation of T cell proliferation    Any process that activates or increases the rate or extent of T cell proliferation.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0032733    positive regulation of interleukin-10 production    Any process that activates or increases the frequency, rate, or extent of interleukin-10 production.
    GO:0043382    positive regulation of memory T cell differentiation    Any process that activates or increases the frequency, rate or extent of memory T cell differentiation.
    GO:0045591    positive regulation of regulatory T cell differentiation    Any process that activates or increases the frequency, rate or extent of differentiation of regulatory T cells.
    GO:0071636    positive regulation of transforming growth factor beta production    Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0008593    regulation of Notch signaling pathway    Any process that modulates the frequency, rate or extent of the Notch signaling pathway.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
    GO:0035581    sequestering of extracellular ligand from receptor    The process of binding or confining an extracellular signaling ligand, such that the ligand is unable to bind to its cell surface receptor.
    GO:0007338    single fertilization    The union of male and female gametes to form a zygote.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0001669    acrosomal vesicle    A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0002079    inner acrosomal membrane    The acrosomal membrane region that underlies the acrosomal vesicle and is located toward the sperm nucleus. This region is responsible for molecular interactions allowing the sperm to penetrate the zona pellucida and fuses with the egg plasma membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        HEMA_MEASE | P083622rkc 2zb5 2zb6 3alw 3alx 3alz
        MCP_HUMAN | P155291ckl 1hr4 2o39 3l89 3o8e 5fo8

(-) Related Entries Specified in the PDB File

1ckl N-TERMINAL TWO DOMAINS OF HUMAN CD46 (MEMBRANE COFACTOR PROTEIN,MCP)
2o39 HUMAN ADENOVIRUS TYPE 11 KNOB IN COMPLEX WITH DOMAINS SCR1 AND SCR2 OF CD46 (MEMBRANE COFACTOR PROTEIN, MCP)
2rkc CRYSTAL STRUCTURE OF THE MEASLES VIRUS HEMAGGLUTININ
2zb5 CRYSTAL STRUCTURE OF THE MEASLES VIRUS HEMAGGLUTININ (COMPLEX-SUGAR-TYPE)
2zb6 CRYSTAL STRUCTURE OF THE MEASLES VIRUS HEMAGGLUTININ (OLIGO -SUGAR TYPE)