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1BGX
Asym. Unit
Info
Asym.Unit (211 KB)
Biol.Unit 1 (206 KB)
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(1)
Title
:
TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB
Authors
:
R. Murali, D. J. Sharkey, J. L. Daiss, H. M. Krishna Murthy
Date
:
02 Jun 98 (Deposition) - 14 Oct 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : H,L,T
Biol. Unit 1: H,L,T (1x)
Keywords
:
Dna Polymerase, Fab, Pcr, Inhibition, Helix-Coil Dynamics, Inhibitor Design, Complex (Polymerase/Inhibitor)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Murali, D. J. Sharkey, J. L. Daiss, H. M. Murthy
Crystal Structure Of Taq Dna Polymerase In Complex With An Inhibitory Fab: The Fab Is Directed Against An Intermediate In The Helix-Coil Dynamics Of The Enzyme.
Proc. Natl. Acad. Sci. Usa V. 95 12562 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DNA_POLYMERASE_A (T:659-678)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_POLYMERASE_A
PS00447
DNA polymerase family A signature.
DPO1_THEAQ
659-678
1
T:659-678
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(8, 8)
Info
All SCOP Domains
1a: SCOP_d1bgxt1 (T:174-289)
2a: SCOP_d1bgxh2 (H:116-209)
3a: SCOP_d1bgxl2 (L:108-211)
4a: SCOP_d1bgxh1 (H:5-115)
5a: SCOP_d1bgxl1 (L:1-107)
6a: SCOP_d1bgxt2 (T:1-173)
7a: SCOP_d1bgxt3 (T:290-422)
8a: SCOP_d1bgxt4 (T:423-832)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(21)
Family
:
5' to 3' exonuclease, C-terminal subdomain
(20)
Protein domain
:
5' to 3' exonuclease domain of DNA polymerase Taq
(3)
Thermus aquaticus [TaxId: 271]
(3)
1a
d1bgxt1
T:174-289
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
2a
d1bgxh2
H:116-209
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
3a
d1bgxl2
L:108-211
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
(38)
4a
d1bgxh1
H:5-115
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(40)
5a
d1bgxl1
L:1-107
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PIN domain-like
(32)
Superfamily
:
PIN domain-like
(32)
Family
:
5' to 3' exonuclease catalytic domain
(20)
Protein domain
:
5' to 3' exonuclease domain of DNA polymerase Taq
(3)
Thermus aquaticus [TaxId: 271]
(3)
6a
d1bgxt2
T:1-173
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
DnaQ-like 3'-5' exonuclease
(253)
Protein domain
:
Exonuclease domain of prokaryotic DNA polymerase
(81)
Thermus aquaticus [TaxId: 271]
(24)
7a
d1bgxt3
T:290-422
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
DNA polymerase I
(233)
Protein domain
:
DNA polymerase I (Klenow fragment)
(82)
Thermus aquaticus [TaxId: 271]
(24)
8a
d1bgxt4
T:423-832
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CATH Domains
(6, 10)
Info
all CATH domains
1a: CATH_1bgxT05 (T:562-613,T:758-831)
2a: CATH_1bgxT03 (T:300-446)
3a: CATH_1bgxT01 (T:1-176,T:250-283)
4a: CATH_1bgxT02 (T:177-249)
4b: CATH_1bgxT06 (T:614-757)
5a: CATH_1bgxT04 (T:447-561)
6a: CATH_1bgxL02 (L:109-211)
6b: CATH_1bgxL01 (L:1-108)
6c: CATH_1bgxH02 (H:116-208)
6d: CATH_1bgxH01 (H:5-115)
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)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.370, no name defined]
(99)
Thermus aquaticus. Organism_taxid: 271.
(2)
1a
1bgxT05
T:562-613,T:758-831
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Thermus aquaticus. Organism_taxid: 271.
(2)
2a
1bgxT03
T:300-446
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
5'-nuclease
(19)
Thermus aquaticus. Organism_taxid: 271.
(2)
3a
1bgxT01
T:1-176,T:250-283
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
Thermus aquaticus. Organism_taxid: 271.
(2)
4a
1bgxT02
T:177-249
4b
1bgxT06
T:614-757
Architecture
:
Up-down Bundle
(3216)
Topology
:
Taq DNA Polymerase; Chain T, domain 4
(88)
Homologous Superfamily
:
Taq DNA Polymerase; Chain T, domain 4
(88)
Thermus aquaticus. Organism_taxid: 271.
(2)
5a
1bgxT04
T:447-561
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Thermus aquaticus. Organism_taxid: 271.
(1)
6a
1bgxL02
L:109-211
6b
1bgxL01
L:1-108
6c
1bgxH02
H:116-208
6d
1bgxH01
H:5-115
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Pfam Domains
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Asym.Unit (211 KB)
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