Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Bending classification of helical axis - Straight line
(Last update: November 15, 2004)


Table 1a:

Structures for which the helical axis is best described by a straight line.
Sigma2 of the straight line is significantly smaller (> 0.2) than for the next-best model(s). The structures are listed by the number of base pairs (bp).

Number of structures: 177

PDB  NDB  IMB Jena
Image Library
bp
molecule
type
method
s(2)
110d
ddf039
E   |    H   |    B
6
nuc
diff
0.676
146d
------
E   |    H   |    B
6
nuc
NMR
0.180
151d
ddf044
E   |    H   |    B
6
nuc
diff
0.430
152d
ddf045
E   |    H   |    B
6
nuc
diff
0.391
182d
ddf049
E   |    H   |    B
6
nuc
diff
0.164
185d
------
E   |    H   |    B
6
nuc
NMR
0.470
198d
ddf050
E   |    H   |    B
6
nuc
diff
0.329
1agl
ddf072
E   |    H   |    B
6
nuc
diff
0.327
1ao1
------
E   |    H   |    B
6
nuc
NMR
0.494
1bcb
------
E   |    H   |    B
6
nuc
NMR
0.098
1bce
------
E   |    H   |    B
6
nuc
NMR
0.049
1buf
------
E   |    H   |    B
6
nuc
NMR
0.091
1c9z
dd0018
E   |    H   |    B
6
nuc
diff
0.359
1cx3
------
E   |    H   |    B
6
nuc
NMR
0.264
1d10
ddf020
E   |    H   |    B
6
nuc
diff
0.422
1d11
ddf001
E   |    H   |    B
6
nuc
diff
0.395
1d12
ddf019
E   |    H   |    B
6
nuc
diff
0.405
1d14
ddfp21
E   |    H   |    B
6
nuc
diff
0.486
1d15
ddf022
E   |    H   |    B
6
nuc
diff
0.407
1d17
ddfa16
E   |    H   |    B
6
nuc
diff
0.107
1d1u
pd0152
E   |    H   |    B
6
prot-nuc
diff
0.125
1d21
ddfa14
E   |    H   |    B
6
nuc
diff
0.105
1d22
ddfa15
E   |    H   |    B
6
nuc
diff
0.143
1d33
ddf023
E   |    H   |    B
6
nuc
diff
0.455
1d35
ddfb25
E   |    H   |    B
6
nuc
diff
0.455
1d36
ddf026
E   |    H   |    B
6
nuc
diff
0.354
1d37
ddf028
E   |    H   |    B
6
nuc
diff
0.248
1d38
ddf029
E   |    H   |    B
6
nuc
diff
0.442
1d3r
bd0017
E   |    H   |    B
6
nuc
diff
0.263
1d54
ddf035
E   |    H   |    B
6
nuc
diff
0.634
1d58
ddf036
E   |    H   |    B
6
nuc
diff
0.467
1d67
ddf038
E   |    H   |    B
6
nuc
diff
0.366
1d97
bdfp24
E   |    H   |    B
6
nuc
diff
0.320
1da0
ddf018
E   |    H   |    B
6
nuc
diff
0.639
1da9
ddf040
E   |    H   |    B
6
nuc
diff
0.865
1dl8
dd0023
E   |    H   |    B
6
nuc
diff
0.196
1em0
dd0027
E   |    H   |    B
6
nuc
diff
0.276
1f69
bd0039
E   |    H   |    B
6
nuc
diff
0.142
1f6c
bd0040
E   |    H   |    B
6
nuc
diff
0.136
1g00
ad0010
E   |    H   |    B
6
nuc
diff
0.163
1g5k
------
E   |    H   |    B
6
nuc
NMR
0.231
1gj1
------
E   |    H   |    B
6
nuc
NMR
0.112
1i5v
------
E   |    H   |    B
6
nuc
NMR
1.326
1i6j
pd0202
E   |    H   |    B
6
prot-nuc
diff
0.206
1i7j
ar0031
E   |    H   |    B
6
nuc
diff
0.147
1ih1
bd0050
E   |    H   |    B
6
nuc
diff
0.189
1ih2
ad0021
E   |    H   |    B
6
nuc
diff
0.259
1ih3
ad0022
E   |    H   |    B
6
nuc
diff
0.147
1ih4
ad0023
E   |    H   |    B
6
nuc
diff
0.234
1ih6
ad0024
E   |    H   |    B
6
nuc
diff
0.366
1imr
ddf061
E   |    H   |    B
6
nuc
diff
0.370
1ims
ddf062
E   |    H   |    B
6
nuc
diff
0.393
1ixy
pd0333
E   |    H   |    B
6
prot-nuc
diff
0.127
1j7t
dr0006
E   |    H   |    B
6
nuc
diff
1.360
1k2j
------
E   |    H   |    B
6
nuc
NMR
0.303
1k2k
------
E   |    H   |    B
6
nuc
NMR
0.276
1k82
pd0264
E   |    H   |    B
6
prot-nuc
diff
0.209
1k9g
dd0047
E   |    H   |    B
6
nuc
diff
0.126
1kci
dd0048
E   |    H   |    B
6
nuc
diff
0.271
1kfv
pd0277
E   |    H   |    B
6
prot-nuc
diff
0.067
1l1t
pd0292
E   |    H   |    B
6
prot-nuc
diff
0.247
1l1z
pd0293
E   |    H   |    B
6
prot-nuc
diff
0.185
1l2b
pd0294
E   |    H   |    B
6
prot-nuc
diff
0.128
1l2c
pd0295
E   |    H   |    B
6
prot-nuc
diff
1.543
1l2d
pd0296
E   |    H   |    B
6
prot-nuc
diff
0.859
1l3z
ar0040
E   |    H   |    B
6
nuc
diff
0.169
1m0e
pd0327
E   |    H   |    B
6
prot-nuc
diff
0.174
1m5r
pd0334
E   |    H   |    B
6
prot-nuc
diff
0.108
1msw
pd0345
E   |    H   |    B
6
prot-nuc
diff
0.379
1mtg
------
E   |    H   |    B
6
nuc
NMR
0.179
1n0k
------
E   |    H   |    B
6
nuc
NMR
0.897
1n0o
------
E   |    H   |    B
6
nuc
NMR
0.062
1nab
dd0054
E   |    H   |    B
6
nuc
diff
0.887
1p20
dd0056
E   |    H   |    B
6
nuc
diff
0.434
1p24
bd0063
E   |    H   |    B
6
nuc
diff
0.371
1p25
bd0064
E   |    H   |    B
6
nuc
diff
0.150
1p26
bd0065
E   |    H   |    B
6
nuc
diff
0.164
1p51
pd0426
E   |    H   |    B
6
prot-nuc
diff
0.503
1pbl
------
E   |    H   |    B
6
nuc
NMR
0.155
1pbm
------
E   |    H   |    B
6
nuc
NMR
0.056
1q2r
pr0101
E   |    H   |    B
6
prot-nuc
diff
0.319
1q2s
pr0102
E   |    H   |    B
6
prot-nuc
diff
0.343
1qch
------
E   |    H   |    B
6
nuc
NMR
0.243
1qda
dd0022
E   |    H   |    B
6
nuc
diff
0.886
1s9b
bd0069
E   |    H   |    B
6
nuc
diff
0.194
1uqa
------
E   |    H   |    B
6
nuc
NMR
0.050
1uqb
------
E   |    H   |    B
6
nuc
NMR
0.091
1uqc
------
E   |    H   |    B
6
nuc
NMR
0.311
1uqd
------
E   |    H   |    B
6
nuc
NMR
0.027
1uqe
------
E   |    H   |    B
6
nuc
NMR
0.216
1uqf
------
E   |    H   |    B
6
nuc
NMR
0.162
1uqg
------
E   |    H   |    B
6
nuc
NMR
0.146
1x95
------
E   |    H   |    B
6
nuc
NMR
0.369
206d
bdf062
E   |    H   |    B
6
nuc
diff
0.303
215d
ddf053
E   |    H   |    B
6
nuc
diff
0.453
224d
ddf052
E   |    H   |    B
6
nuc
diff
0.089
234d
ddf054
E   |    H   |    B
6
nuc
diff
0.277
235d
ddf055
E   |    H   |    B
6
nuc
diff
0.324
236d
ddf056
E   |    H   |    B
6
nuc
diff
0.361
245d
ddf063
E   |    H   |    B
6
nuc
diff
0.120
251d
bdf068
E   |    H   |    B
6
nuc
diff
0.048
254d
adfb62
E   |    H   |    B
6
nuc
diff
0.145
256d
adfb72
E   |    H   |    B
6
nuc
diff
0.170
257d
adf073
E   |    H   |    B
6
nuc
diff
0.445
258d
ddf064
E   |    H   |    B
6
nuc
diff
0.355
275d
adfb63
E   |    H   |    B
6
nuc
diff
0.116
276d
ddf066
E   |    H   |    B
6
nuc
diff
0.372
277d
ddf067
E   |    H   |    B
6
nuc
diff
0.776
278d
ddf068
E   |    H   |    B
6
nuc
diff
0.663
282d
ddf069
E   |    H   |    B
6
nuc
diff
0.073
288d
ddf065
E   |    H   |    B
6
nuc
diff
0.344
2d34
ddfb24
E   |    H   |    B
6
nuc
diff
0.381
2da8
------
E   |    H   |    B
6
nuc
NMR
0.855
2des
ddf041
E   |    H   |    B
6
nuc
diff
0.557
308d
ddfb70
E   |    H   |    B
6
nuc
diff
0.590
310d
arfs26
E   |    H   |    B
6
nuc
diff
0.081
332d
ahh089
E   |    H   |    B
6
nuc
diff
0.475
343d
adfb97
E   |    H   |    B
6
nuc
diff
0.778
366d
ddf073
E   |    H   |    B
6
nuc
diff
0.176
367d
ddf074
E   |    H   |    B
6
nuc
diff
0.235
377d
arf0108
E   |    H   |    B
6
nuc
diff
0.055
380d
ddfb76
E   |    H   |    B
6
nuc
diff
0.531
385d
ddf078
E   |    H   |    B
6
nuc
diff
0.305
386d
ddf079
E   |    H   |    B
6
nuc
diff
0.374
418d
dr0001
E   |    H   |    B
6
nuc
diff
0.729
452d
dd0012
E   |    H   |    B
6
nuc
diff
0.224
465d
dd0015
E   |    H   |    B
6
nuc
diff
0.234
482d
dd0017
E   |    H   |    B
6
nuc
diff
0.446
7ice
pde047
E   |    H   |    B
6
prot-nuc
diff
0.251
7icf
pde048
E   |    H   |    B
6
prot-nuc
diff
0.385
7icg
pde049
E   |    H   |    B
6
prot-nuc
diff
0.187
7ich
pde050
E   |    H   |    B
6
prot-nuc
diff
0.433
7ici
pde051
E   |    H   |    B
6
prot-nuc
diff
0.315
7icj
pde052
E   |    H   |    B
6
prot-nuc
diff
0.353
7ick
pde053
E   |    H   |    B
6
prot-nuc
diff
0.154
7icl
pde054
E   |    H   |    B
6
prot-nuc
diff
0.242
7icm
pde055
E   |    H   |    B
6
prot-nuc
diff
0.221
7icn
pde056
E   |    H   |    B
6
prot-nuc
diff
0.181
7ico
pde057
E   |    H   |    B
6
prot-nuc
diff
0.263
7icp
pde058
E   |    H   |    B
6
prot-nuc
diff
0.211
7icq
pde059
E   |    H   |    B
6
prot-nuc
diff
0.269
7icr
pde060
E   |    H   |    B
6
prot-nuc
diff
0.152
7ics
pde061
E   |    H   |    B
6
prot-nuc
diff
0.167
7ict
pde062
E   |    H   |    B
6
prot-nuc
diff
0.235
7icu
pde063
E   |    H   |    B
6
prot-nuc
diff
0.472
7icv
pde088
E   |    H   |    B
6
prot-nuc
diff
0.361
9ick
pde0100
E   |    H   |    B
6
prot-nuc
diff
0.153
9icl
pde0101
E   |    H   |    B
6
prot-nuc
diff
0.183
9icm
pde0102
E   |    H   |    B
6
prot-nuc
diff
0.183
9icn
pde0103
E   |    H   |    B
6
prot-nuc
diff
0.216
9ico
pde0104
E   |    H   |    B
6
prot-nuc
diff
0.195
9icp
pde0105
E   |    H   |    B
6
prot-nuc
diff
0.198
9icq
pde0106
E   |    H   |    B
6
prot-nuc
diff
0.222
9icr
pde0107
E   |    H   |    B
6
prot-nuc
diff
0.285
9ics
pde0108
E   |    H   |    B
6
prot-nuc
diff
0.342
9ict
pde0109
E   |    H   |    B
6
prot-nuc
diff
0.284
9icu
pde0110
E   |    H   |    B
6
prot-nuc
diff
0.212
9icw
pde0112
E   |    H   |    B
6
prot-nuc
diff
0.265
9icx
pde0113
E   |    H   |    B
6
prot-nuc
diff
0.222
1lwv
pd0321
E   |    H   |    B
7
prot-nuc
diff
0.145
1lww
pd0322
E   |    H   |    B
7
prot-nuc
diff
0.103
1lwy
pd0323
E   |    H   |    B
7
prot-nuc
diff
0.226
1lyr
------
E   |    H   |    B
7
prot-nuc
model
0.297
1n39
pd0357
E   |    H   |    B
7
prot-nuc
diff
0.288
1n3a
pd0355
E   |    H   |    B
7
prot-nuc
diff
0.200
1n3c
pd0356
E   |    H   |    B
7
prot-nuc
diff
0.214
1zqa
pde027
E   |    H   |    B
7
prot-nuc
diff
0.120
1zqd
pde030
E   |    H   |    B
7
prot-nuc
diff
0.325
2bpf
pde011
E   |    H   |    B
7
prot-nuc
diff
0.384
1cp8
------
E   |    H   |    B
8
nuc
NMR
0.631
1eki
------
E   |    H   |    B
8
nuc
NMR
0.962
1oup
pd0403
E   |    H   |    B
8
prot-nuc
diff
0.514
1vaq
dd0063
E   |    H   |    B
8
nuc
diff
0.821
203d
------
E   |    H   |    B
8
nuc
NMR
0.506
28dn
adh023
E   |    H   |    B
8
nuc
diff
0.218
5ana
adh024
E   |    H   |    B
8
nuc
diff
0.245
1qaa
------
E   |    H   |    B
20
prot-nuc
model
0.000

Abbreviations