1NAB | DD0054 - JenaLib

Title :   THE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN A DISACCHARIDE ANTHRACYCLINE AND THE DNA HEXAMER D(CGATCG) REVEALS TWO DIFFERENT BINDING SITES INVOLVING TWO DNA DUPLEXES

Authors :   C. Temperini, L. Messori, P. Orioli, C. Di Bugno, F. Animati, G. Ughett

Date :   27 Nov 02 (Deposition) - 25 Feb 03 (Release) - 08 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym./Biol. Unit : A,B

Keywords :   Right Handed Dna, Double Helix, Complexed With Drug, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Temperini, L. Messori, P. Orioli, C. Di Bugno, F. Animati, G. Ughetto
The Crystal Structure Of The Complex Between A Disaccharide Anthracycline And The Dna Hexamer D(Cgatcg) Reveals Two Different Binding Sites Involving Two Dna Duplexes
Nucleic Acids Res. V. 31 1464 2003
PubMed-ID: 12595554 | Reference-DOI: 10.1093/NAR/GKG245
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	44D	2	Ligand/Ion	7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	DC A:5 , DG A:6 , HOH A:43 , DC B:7 , DG B:8 , DA B:9 , DG B:12 , HOH B:46 , HOH B:57 , HOH B:63	BINDING SITE FOR RESIDUE 44D B 40
2	AC2	SOFTWARE	DC A:1 , DG A:2 , DA A:3 , DT A:4 , HOH A:50 , DC B:11 , DG B:12	BINDING SITE FOR RESIDUE 44D A 41

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:DNA  Length:6
                                     
                  1nab A  1 CGATCG  6

Chain B from PDB  Type:DNA  Length:6
                                     
                  1nab B  7 CGATCG 12

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