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(-) Description

Title :  STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES. ADRIAMYCIN AND DAUNOMYCIN
 
Authors :  C. A. Frederick, L. D. Williams, G. Ughetto, G. A. Van Der Marel, J. H. Van Boom, A. Rich, A. H. -J. Wang
Date :  20 Oct 89  (Deposition) - 15 Oct 90  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Right Handed Dna, Double Helix, Complexed With Drug (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. A. Frederick, L. D. Williams, G. Ughetto, G. A. Van Der Marel, J. H. Van Boom, A. Rich, A. H. Wang
Structural Comparison Of Anticancer Drug-Dna Complexes: Adriamycin And Daunomycin.
Biochemistry V. 29 2538 1990
PubMed-ID: 2334681  |  Reference-DOI: 10.1021/BI00462A016
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
    ChainsA
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1DM11Ligand/IonDAUNOMYCIN
2NA1Ligand/IonSODIUM ION
3SPM1Ligand/IonSPERMINE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1DM12Ligand/IonDAUNOMYCIN
2NA-1Ligand/IonSODIUM ION
3SPM2Ligand/IonSPERMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:1 , DG A:2 , DA A:3 , DT A:4 , DC A:5 , DG A:6 , SPM A:8 , NA A:9 , HOH A:32BINDING SITE FOR RESIDUE DM1 A 7
2AC2SOFTWAREDG A:2 , DA A:3 , DT A:4 , DC A:5 , DG A:6 , DM1 A:7 , HOH A:27 , HOH A:50 , HOH A:52 , HOH A:59BINDING SITE FOR RESIDUE SPM A 8
3AC3SOFTWAREDG A:6 , DM1 A:7 , HOH A:10 , HOH A:11 , HOH A:12BINDING SITE FOR RESIDUE NA A 9

(-) SS Bonds  (0, 0)

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Chain A from PDB  Type:DNA  Length:6
                                    
                   1d10 A 1 CGATCG 6

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