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(-) Description

Title :  CRYSTAL STRUCTURE OF COBALT(II)-D(GGCGCC)2
 
Authors :  S. L. Labiuk, L. T. Delbaere, J. S. Lee
Date :  14 Apr 03  (Deposition) - 09 Dec 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.02
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  D,E  (1x)
Keywords :  B-Dna, Cobalt Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. L. Labiuk, L. T. Delbaere, J. S. Lee
Cobalt(Ii), Nickel(Ii) And Zinc(Ii) Do Not Bind To Intra-Helical N(7) Guanine Positions In The B-Form Crystal Structure Of D(Ggcgcc)
J. Biol. Inorg. Chem. V. 8 715 2003
PubMed-ID: 14505075  |  Reference-DOI: 10.1007/S00775-003-0473-4
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*GP*CP*GP*CP*C)-3')
    Chains: A, B, C, D, E
    Engineered: YES
    Other Details: SYNTHESIZED BY ALPHADNA (QUEBEC, PQ, CANADA)
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (2x): A    
Biological Unit 2 (1x):  BC  
Biological Unit 3 (1x):    DE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1CO5Ligand/IonCOBALT (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:1 , HOH A:201 , HOH A:202 , HOH A:203 , HOH A:204 , HOH A:205BINDING SITE FOR RESIDUE CO A 101
2AC2SOFTWAREDG B:7 , HOH B:206 , HOH B:207 , HOH B:208 , HOH B:209 , HOH B:210BINDING SITE FOR RESIDUE CO B 102
3AC3SOFTWAREDG C:13 , HOH C:211 , HOH C:212 , HOH C:213 , HOH C:214 , HOH C:215BINDING SITE FOR RESIDUE CO C 103
4AC4SOFTWAREDG D:19 , HOH D:216 , HOH D:217 , HOH D:218 , HOH D:219 , HOH D:220BINDING SITE FOR RESIDUE CO D 104
5AC5SOFTWAREDC A:3 , DG E:25 , HOH E:221 , HOH E:222 , HOH E:223 , HOH E:224 , HOH E:225BINDING SITE FOR RESIDUE CO E 105

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1P24)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1P24)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1P24)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1P24)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:6
                                     
                  1p24 A  1 GGCGCC  6


Chain B from PDB  Type:DNA  Length:6
                                     
                  1p24 B  7 GGCGCC 12


Chain C from PDB  Type:DNA  Length:6
                                     
                  1p24 C 13 GGCGCC 18


Chain D from PDB  Type:DNA  Length:6
                                     
                  1p24 D 19 GGCGCC 24


Chain E from PDB  Type:DNA  Length:6
                                     
                  1p24 E 25 GGCGCC 30
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1P24)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1P24)

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(-) Gene Ontology  (0, 0)

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(-) Related Entries Specified in the PDB File

1p25 1p26