Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 5a - Page 2:

Structures with an automatically assigned single-kink helical axis.
All structures included in this Table have 12 or less base pairs.
Sigma2 of a single-kink line is only slightly smaller (< 0.2) than for the next best model(s). For small kink angles it is not possible to differentiate manually between single-kink or double-kink helical axes.
The structures are listed by the kink angle alpha (a).

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Number of structures: 59 (this pages) / 179 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
1h9d	pd0210	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.255		11			6	3
						circular line	0.342	126
						straight line	0.400
1i3t	bd0048	E   |    H   |    B	12	nuc	diff	single-kink line	0.080		11			5	7
						circular line	0.107	122
1mxj	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.063		11			4	7
						circular line	0.106	111
1n1n	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.068		11			5	5
						circular line	0.087	121
1n3f	pd0361	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.154		11			4	6
						circular line	0.223	112
1onm	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.050		11			4	7
						circular line	0.096	111
1pib	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.212		11			2	7
						straight line	0.229
						circular line	0.262	200
289d	gdl045	E   |    H   |    B	12	nuc	diff	single-kink line	0.079		11			4	8
						circular line	0.112	130
2bna	bdl002	E   |    H   |    B	12	nuc	diff	single-kink line	0.067		11			4	8
						circular line	0.094	139
2ezg	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.069		11			3	9
						circular line	0.176	238
388d	bdlb84	E   |    H   |    B	12	nuc	diff	single-kink line	0.076		11			4	8
						circular line	0.130	140
1a1i	pdt059	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.230		12			6	4
						circular line	0.249	92
1bbx	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.692		12			6	6
						circular line	0.702	115
1d45	gdl012	E   |    H   |    B	12	nuc	diff	single-kink line	0.069		12			4	8
						circular line	0.097	124
1dcv	bd0028	E   |    H   |    B	10	nuc	diff	single-kink line	0.178		12			5	5
						circular line	0.210	85
1mq3	pd0344	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.077		12			4	6
						circular line	0.127	96
1msf	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.323		12			7	4
						circular line	0.448	121
1ql5	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.208		12			6	4
						circular line	0.228	96
1qsx	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.065		12			7	5
						circular line	0.127	109
358d	gdjb55	E   |    H   |    B	10	nuc	diff	single-kink line	0.038		12			5	5
						circular line	0.044	79
360d	gdl056	E   |    H   |    B	12	nuc	diff	single-kink line	0.088		12			4	8
						circular line	0.125	123
389d	bdlb85	E   |    H   |    B	12	nuc	diff	single-kink line	0.080		12			4	8
						circular line	0.085	117
3pvi	pd0006	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.870		12			7	5
						circular line	0.976	127
9bna	bdl020	E   |    H   |    B	12	nuc	diff	single-kink line	0.066		12			5	7
						circular line	0.068	109
1eyu	pd0147	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.352		13			5	6
						circular line	0.414	96
1gcc	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.064		13			4	7
						circular line	0.140	96
1ijw	pd0213	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.208		13			4	7
						circular line	0.225	97
1l3s	pd0300	E   |    H   |    B	9	prot-nuc	diff	single-kink line	0.088		13			7	2
						circular line	0.145	145
						straight line	0.171
1n3e	pd0360	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.063		13			5	5
						circular line	0.104	80
1qxb	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.173		13			6	6
						circular line	0.188	87
1yuj	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.097		13			6	5
						circular line	0.127	97
370d	adh0104	E   |    H   |    B	8	nuc	diff	single-kink line	0.137		13			5	3
						circular line	0.158	66
						straight line	0.231
421d	dr0003	E   |    H   |    B	8	nuc	diff	single-kink line	0.071		13			3	5
						circular line	0.121	75
						straight line	0.211
194d	bdl059	E   |    H   |    B	12	nuc	diff	single-kink line	0.104		14			4	8
						circular line	0.195	115
1a1j	pdt060	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.170		14			6	4
						circular line	0.206	73
1d99	bdl011	E   |    H   |    B	12	nuc	diff	single-kink line	0.088		14			5	7
						circular line	0.102	91
1hg9	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.117		14			4	5
						circular line	0.136	58
1llm	pd0312	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.138		14			6	6
						circular line	0.143	86
1njx	pd0373	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.205		14			5	6
						circular line	0.281	83
1nk7	pd0380	E   |    H   |    B	9	prot-nuc	diff	single-kink line	0.207		14			7	2
						straight line	0.250
						circular line	0.255	127
1qby	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.215		14			8	3
						circular line	0.393	174
4bdp	pde0133	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.131		14			5	6
						circular line	0.204	80
4dnb	bdlb13	E   |    H   |    B	12	nuc	diff	single-kink line	0.078		14			5	7
						circular line	0.103	91
1a1f	pdt055	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.252		15			7	3
						circular line	0.424	91
1skp	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.144		15			6	5
						circular line	0.199	64
1yui	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.118		15			5	6
						circular line	0.138	84
197d	adh059	E   |    H   |    B	8	nuc	diff	single-kink line	0.129		16			5	3
						circular line	0.160	52
						straight line	0.235
1drr	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.104		16			6	4
						circular line	0.110	60
1oka	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.146		16			5	4
						circular line	0.147	52
1sdr	arl062	E   |    H   |    B	12	nuc	diff	single-kink line	0.102		16			6	6
						circular line	0.144	64
1dsi	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.463		17			8	3
						circular line	0.530	89
1qss	pd0066	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.287		17			5	7
						circular line	0.458	77
1rn9	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.362		17			4	6
						circular line	0.370	61
260d	adj075	E   |    H   |    B	10	nuc	diff	single-kink line	0.111		18			5	5
						circular line	0.179	48
1axv	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.467		19			6	5
						circular line	0.589	68
1dno	ah0007	E   |    H   |    B	10	nuc	diff	single-kink line	0.128		19			3	7
						circular line	0.235	54
1m6x	pd0336	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.153		19			5	7
						circular line	0.272	66
334d	gdj054	E   |    H   |    B	10	nuc	diff	single-kink line	0.309		19			7	3
						circular line	0.445	85
395d	adj0112	E   |    H   |    B	10	nuc	diff	single-kink line	0.051		19			5	5
						circular line	0.120	44

Abbreviations