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(-) Description

Title :  PSEUDOMONAS AERUGINOSA PILM BOUND TO ADP
 
Authors :  M. Mccallum, S. Tammam, H. Robinson, M. Shah, C. Calmettes, T. Moraes, L. L. Burrows, P. L. Howell
Date :  10 Nov 15  (Deposition) - 27 Apr 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pilm, Actin-Like, Type Iv Pilus, T4P, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mccallum, S. Tammam, D. J. Little, H. Robinson, J. Koo, M. Shah, C. Calmettes, T. F. Moraes, L. L. Burrows, P. L. Howell
Piln Binding Modulates The Structure And Binding Partners O The Pseudomonas Aeruginosa Type Iva Pilus Protein Pilm.
J. Biol. Chem. V. 291 11003 2016
PubMed-ID: 27022027  |  Reference-DOI: 10.1074/JBC.M116.718353

(-) Compounds

Molecule 1 - TYPE 4 FIMBRIAL BIOGENESIS PROTEIN PILM
    Atcc: 15692
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PILM, PA5044
    Organism Scientific: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:18 , THR A:20 , LYS A:23 , GLY A:201 , ALA A:202 , LYS A:247 , GLY A:295 , GLY A:296 , THR A:297 , SER A:299 , MG A:402 , HOH A:503 , HOH A:507 , HOH A:508 , HOH A:524binding site for residue ADP A 401
2AC2SOFTWAREASP A:199 , ADP A:401 , HOH A:504 , HOH A:507 , HOH A:508 , HOH A:524 , HOH A:539binding site for residue MG A 402
3AC3SOFTWARESER B:18 , THR B:20 , LYS B:23 , GLY B:201 , ALA B:202 , LYS B:247 , LYS B:248 , GLY B:295 , GLY B:296 , THR B:297 , SER B:299 , ILE B:300 , ALA B:341 , MG B:402 , HOH B:501 , HOH B:508 , HOH B:510 , HOH B:514binding site for residue ADP B 401
4AC4SOFTWAREADP B:401 , HOH B:508 , HOH B:510 , HOH B:520binding site for residue MG B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EOX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:187 -Ala A:188
2Gly B:187 -Ala B:188

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EOX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EOX)

(-) Exons   (0, 0)

(no "Exon" information available for 5EOX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee...eeeeeeeeee..eeeeeeeeeee.....ee..ee.hhhhhhhhhhhhhhhhh....eeeeeehhhhheeeeeeee...hhhhhhhhhhhh.......hhh.eeeeeeeeee......eeeeeeeeeehhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh....eeeeeee....eeeeeee..eeeeeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeehhhhhh.hhhhhhhhhhh..eee.......ee....hhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eox A  -1 SHMLGLIKKNTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVVAVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLGADTLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSVEEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADMALNGKVNAGALASDAPALMIACGLALRSFD 354
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190|      202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
                                    7|                                                                                                                                                                                 190|                                                                                                                                                                 
                                    10                                                                                                                                                                                  193                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:353
                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...eeeeeeeeee..eeeeeeeeeee.....ee..ee.hhhhhhhhhhhhhhhhh....eeeeeehhhhheeeeeeee...hhhhhhhhhhhhhhhhh..hhh.eeeeeeeeee......eeeeeeeeeehhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh......eeeeeee....eeeeeee..eeeeeeee...hhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeehhhhhh.hhhhhhhhhhh..eee.......ee....hhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eox B   0 HMLGLIKKNTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVVAVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSVEEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADMALNGKVNAGALASDAPALMIACGLALRSFD 354
                                   |11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351   
                                   7|                                                                                                                                                                                                                                                                                                                                                        
                                   10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EOX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EOX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EOX)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:187 - Ala A:188   [ RasMol ]  
    Gly B:187 - Ala B:188   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G3XD28_PSEAE | G3XD28: 5eou 5eoy 5eq6

(-) Related Entries Specified in the PDB File

5eou 5eoy