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(-) Description

Title :  PSEUDOMONAS AERUGINOSA SEMET-PILM BOUND TO ADP
 
Authors :  M. Mccallum, S. Tammam, H. Robinson, M. Shah, C. Calmettes, T. Moraes, L. L. Burrows, P. L. Howell
Date :  10 Nov 15  (Deposition) - 27 Apr 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pilm, Actin-Like, Type Iv Pilus, T4P, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mccallum, S. Tammam, D. J. Little, H. Robinson, J. Koo, M. Shah, C. Calmettes, T. F. Moraes, L. L. Burrows, P. L. Howell
Piln Binding Modulates The Structure And Binding Partners O The Pseudomonas Aeruginosa Type Iva Pilus Protein Pilm.
J. Biol. Chem. V. 291 11003 2016
PubMed-ID: 27022027  |  Reference-DOI: 10.1074/JBC.M116.718353

(-) Compounds

Molecule 1 - TYPE 4 FIMBRIAL BIOGENESIS PROTEIN PILM
    Atcc: 15692
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PILM, PA5044
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG3Ligand/IonMAGNESIUM ION
3MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:18 , THR A:20 , LYS A:23 , GLY A:201 , ALA A:202 , LYS A:247 , GLY A:296 , THR A:297 , SER A:299 , ILE A:300 , MG A:402 , HOH A:501 , HOH A:513 , HOH A:515 , HOH A:524binding site for residue ADP A 401
2AC2SOFTWAREADP A:401 , HOH A:501 , HOH A:513 , HOH A:519 , HOH A:526 , HOH A:539binding site for residue MG A 402
3AC3SOFTWAREASP A:112 , ILE A:115 , HOH A:520 , HOH A:533 , GLU B:259binding site for residue MG A 403
4AC4SOFTWARESER B:18 , THR B:20 , LYS B:23 , GLY B:201 , ALA B:202 , LYS B:247 , LYS B:248 , GLY B:296 , THR B:297 , SER B:299 , ALA B:341 , MG B:402 , HOH B:502 , HOH B:507 , HOH B:516 , HOH B:519binding site for residue ADP B 401
5AC5SOFTWAREADP B:401 , HOH B:502 , HOH B:507 , HOH B:508 , HOH B:537binding site for residue MG B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EOY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EOY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EOY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EOY)

(-) Exons   (0, 0)

(no "Exon" information available for 5EOY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee...eeeeeeeeee..eeeeeeeeeee.....ee..ee.hhhhhhhhhhhhhhhhh....eeeeeehhhhheeeeeeee...hhhhhhhhhhhhhh.....hhh.eeeeeeeeee......eeeeeeeeeehhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh....hhhh.eeeeeee....eeeeeee..eeeeeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeehhhhhh.hhhhhhhhhhh..eee.......ee....hhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eoy A  -1 SHmLGLIKKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVVAVAGSAVITKTIEmEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATmTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSVEEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADmALNGKVNAGALASDAPALmIACGLALRSFD 354
                              |      8        18        28        38        48        58        68        78        88     |  98       108       118       128       138       148       158       168       178       188       198     | 208       218       228       238       248       258       268       278       288       298       308       318     | 328       338    |  348      
                              |                                                                                           94-MSE                                                                                                       204-MSE                                                                                                                 324-MSE            343-MSE       
                              1-MSE                                                                                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:354
                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee...eeeeeeeeee..eeeeeeeeeee.....ee..ee.hhhhhhhhhhhhhhhhh....eeeeeehhhhheeeeeeee...hhhhhhhhhhhhhhhhh..hhh.eeeeeeeeee......eeeeeeeeeehhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh...hhhh.eeeeeee....eeeeeee..eeeeeeee...hhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeehhhhhh.hhhhhhhhhhh..eee.......ee....hhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5eoy B  -1 SHmLGLIKKKNTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVVAVAGSAVITKTIEmEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLADTDQLTVAVVDIGATmTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSVEEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADmALNGKVNAGALASDAPALmIACGLALRSFD 354
                              |      8|       19        29        39        49        59        69        79        89    |   99       109       119       129       139       149       159       169       179      |190       200   |   210       220       230       240       250       260       270       280       290       300       310       320   |   330       340  |    350    
                              1-MSE  8|                                                                                  94-MSE                                                                                     186|             204-MSE                                                                                                                 324-MSE            343-MSE       
                                     10                                                                                                                                                                              188
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EOY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EOY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EOY)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G3XD28_PSEAE | G3XD28: 5eou 5eox 5eq6

(-) Related Entries Specified in the PDB File

5eou 5eox