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(-) Description

Title :  PSEUDOMONAS AERUGINOSA PILM BOUND TO AMP-PNP
 
Authors :  M. Mccallum, S. Tammam, H. Robinson, M. Shah, C. Calmettes, T. Moraes, L. L. Burrows, P. L. Howell
Date :  12 Nov 15  (Deposition) - 27 Apr 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pilm, Type Iv Pilus, T4P, Hsp70-Like, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mccallum, S. Tammam, D. J. Little, H. Robinson, J. Koo, M. Shah, C. Calmettes, T. F. Moraes, L. L. Burrows, P. L. Howell
Piln Binding Modulates The Structure And Binding Partners O The Pseudomonas Aeruginosa Type Iva Pilus Protein Pilm.
J. Biol. Chem. V. 291 11003 2016
PubMed-ID: 27022027  |  Reference-DOI: 10.1074/JBC.M116.718353

(-) Compounds

Molecule 1 - TYPE 4 FIMBRIAL BIOGENESIS PROTEIN PILM
    Atcc: 15692
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PILM, PA5044
    Organism Scientific: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:18 , SER A:19 , THR A:20 , SER A:21 , LYS A:23 , LYS A:52 , GLY A:201 , ALA A:202 , THR A:203 , MET A:204 , LYS A:247 , LYS A:248 , GLY A:296 , THR A:297 , ILE A:300 , MG A:402 , HOH A:508binding site for residue ANP A 401
2AC2SOFTWAREANP A:401binding site for residue MG A 402
3AC3SOFTWARESER B:18 , SER B:19 , THR B:20 , SER B:21 , LYS B:23 , GLY B:201 , ALA B:202 , THR B:203 , MET B:204 , LYS B:247 , LYS B:248 , GLY B:295 , GLY B:296 , THR B:297 , SER B:299 , ILE B:300 , MG B:402binding site for residue ANP B 401
4AC4SOFTWAREANP B:401 , HOH B:503binding site for residue MG B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EQ6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EQ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EQ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EQ6)

(-) Exons   (0, 0)

(no "Exon" information available for 5EQ6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:357
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeee...eeeeeeeee....eeeeeeeeee.....ee..ee.hhhhhhhhhhhhhhhhh....eeeeeehhhhheeeeeeee...hhhhhhhhhhhhhhhhh......eeeeeeeeee......eeeeeeeeeehhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh.........eeeeeee....eeeeeee..eeeeeeee...hhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeehhhhhh.hhhhhhhhhhh..eee.......ee....hhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eq6 A  -2 GSHMLGLIKKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVVAVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSVEEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADMALNGKVNAGALASDAPALMIACGLALRSFD 354
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       


Chain B from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee...eeeeeeee....eeeeeeeee.....ee..ee.hhhhhhhhhhhhhhhhh....eeeeeehhhhheeeeeeee...hhhhhhhhhhhhhhhhh..hhh.eeeeeeeeee......eeeeeeeeeehhhhhhhhhhhhh...eeeeeeehhhhhhhhhh.hhhhhh......eeeeeee....eeeeeee..eeeeeeee...hhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeehhhhhh.hhhhhhhhhhh..eee.......ee....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eq6 B  -1 SHMLGLIKKNTLLGIDISSTSVKLLELSRSRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVVAVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSVEEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADMALNGKVNAGALASDAPALMIACGLALRSFD 354
                                    10        20        30|       42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
                                    7|                  30|                                                                                                                                                                                                                                                                                                                                 
                                    10                   33
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EQ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EQ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EQ6)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G3XD28_PSEAE | G3XD28: 5eou 5eox 5eoy

(-) Related Entries Specified in the PDB File

5eox 5eoy