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(-) Description

Title :  PSEUDOMONAS AERUGINOSA PILM:PILN1-12 BOUND TO ATP
 
Authors :  M. Mccallum, S. Tammam, H. Robinson, M. Shah, C. Calmettes, T. Moraes, L L. P. Howell
Date :  10 Nov 15  (Deposition) - 27 Apr 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Pilm, Piln, Type Iv Pilus, T4P, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mccallum, S. Tammam, D. J. Little, H. Robinson, J. Koo, M. Shah, C. Calmettes, T. F. Moraes, L. L. Burrows, P. L. Howell
Piln Binding Modulates The Structure And Binding Partners O The Pseudomonas Aeruginosa Type Iva Pilus Protein Pilm.
J. Biol. Chem. V. 291 11003 2016
PubMed-ID: 27022027  |  Reference-DOI: 10.1074/JBC.M116.718353

(-) Compounds

Molecule 1 - TYPE 4 FIMBRIAL BIOGENESIS PROTEIN PILM,TYPE 4 FIMBRIAL BIOGENESIS PROTEIN PILN
    Atcc: 15692
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PILM, PA5044, PILN, PA5043
    Organism Scientific: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228), PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 17)

Asymmetric Unit (5, 17)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CL4Ligand/IonCHLORIDE ION
3MG2Ligand/IonMAGNESIUM ION
4NA2Ligand/IonSODIUM ION
5SO48Ligand/IonSULFATE ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1ATP-1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
4NA-1Ligand/IonSODIUM ION
5SO45Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
4NA-1Ligand/IonSODIUM ION
5SO43Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:18 , SER A:19 , LYS A:52 , GLY A:201 , ALA A:202 , THR A:203 , MET A:204 , SO4 A:404binding site for residue SO4 A 401
02AC2SOFTWARELYS A:35 , ASN A:327 , GLY A:328binding site for residue SO4 A 403
03AC3SOFTWARESER A:21 , LYS A:23 , GLY A:296 , SO4 A:401 , MG A:408binding site for residue SO4 A 404
04AC4SOFTWARELYS A:148 , ARG A:367binding site for residue SO4 A 405
05AC5SOFTWAREALA A:123 , LEU A:363binding site for residue CL A 406
06AC6SOFTWARETYR A:39 , HOH A:510binding site for residue NA A 407
07AC7SOFTWARESO4 A:404 , HOH A:529binding site for residue MG A 408
08AC8SOFTWARESER B:18 , SER B:19 , THR B:20 , LYS B:23 , GLY B:201 , ALA B:202 , THR B:203 , MET B:204 , LYS B:247 , LYS B:248 , GLY B:295 , GLY B:296 , THR B:297 , SER B:299 , CL B:406 , MG B:409 , HOH B:501 , HOH B:503 , HOH B:535 , HOH B:541binding site for residue ATP B 401
09AC9SOFTWAREGLY B:251binding site for residue SO4 B 402
10AD1SOFTWAREASN B:327 , LYS B:329binding site for residue SO4 B 403
11AD2SOFTWARELYS B:35 , ASN B:327 , GLY B:328binding site for residue SO4 B 404
12AD3SOFTWAREASN B:53 , ILE B:54 , ASN B:150 , ARG B:154binding site for residue CL B 405
13AD4SOFTWARETHR B:229 , ATP B:401binding site for residue CL B 406
14AD5SOFTWAREPRO B:46 , ALA B:48 , GLU B:56binding site for residue NA B 408
15AD6SOFTWARELYS B:52 , ATP B:401 , HOH B:501 , HOH B:535 , HOH B:547binding site for residue MG B 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EOU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EOU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EOU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EOU)

(-) Exons   (0, 0)

(no "Exon" information available for 5EOU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...eeeeeeeee....eeeeeeeeee.....ee..ee.hhhhhhhhhhhhhhhhh....eeeeee.....eeeeeeee......hhh.eeeeee.......eeeeeeeeeehhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhh....hhhh.eeeeeee....eeeeeee..eeeeeeee...hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeehhhhhh.hhhhhhhhhhh..eee.......ee....hhhhhhhhh..hhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eou A   9 ANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVVAVAGSAVITKTIEMEAGLSPYPLEEVAIDFEVSARNPERVDVLLAACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSVEGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADMALNGKVNAGALASDAPALMIACGLALRSFDARINLLPWR 367
                                    18        28        38        48        58        68        78        88        98||     124   ||  137       147       157       167       177       188       198       208       218       228       238  ||   250       260       270       280       290       300       310       320       330       340       350   ||  364   
                                                                                                                     99|         128|                                                   186|                                                  241|                                                                                                           354|        
                                                                                                                     116          132                                                    188                                                   244                                                                                                            359        


Chain B from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeeeeee..eeeeeeeeeee.....ee..ee.hhhhhhhhhhhhhhhhh....eeeeee.....eeeeeeee...hhhhhhhhhhhhhh.....hhh.eeeeeeeeee.....eeeeeeeeeehhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhh...hhhh.eeeeeee....eeeeeee..eeeeeeee...hhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeehhhhhh.hhhhhhhhhhh..eee.......ee....hhhhhhhhh..hhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eou B  10 NTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVVAVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSRNPERVDVLLAACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLDTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSVEEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADMALNGKVNAGALASDAPALMIACGLALRSFDSMARINLLPW 366
                                    19        29        39        49        59        69        79        89        99       109       119       129  ||   140       150       160       170       180     ||192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  ||   364  
                                                                                                                                                    132|                                                 186|                                                                                                                                                                   355|        
                                                                                                                                                     134                                                  189                                                                                                                                                                    358
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EOU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EOU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EOU)

(-) Gene Ontology  (5, 7)

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 Related Entries

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UniProtKB/TrEMBL
        G3XD28_PSEAE | G3XD28: 5eox 5eoy 5eq6

(-) Related Entries Specified in the PDB File

5eox 5eoy