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(-) Description

Title :  CYCLOALTERNAN-DEGRADING ENZYME FROM TRUEPERELLA PYOGENES IN COMPLEX WITH COVALENT INTERMEDIATE
 
Authors :  S. H. Light, G. Minasov, W. F. Anderson, Center For Structural Genom Infectious Diseases (Csgid)
Date :  03 Feb 16  (Deposition) - 14 Dec 16  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  B
Keywords :  Hydrolase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, L. A. Cahoon, K. V. Mahasenan, M. Lee, B. Boggess, A. S. Halavaty, S. Mobashery, N. E. Freitag, W. F. Anderson
Transferase Versus Hydrolase: The Role Of Conformational Flexibility In Reaction Specificity.
Structure V. 25 295 2017
PubMed-ID: 28089449  |  Reference-DOI: 10.1016/J.STR.2016.12.007

(-) Compounds

Molecule 1 - GLYCOSIDE HYDROLASE FAMILY 31
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CQ11_05330
    Organism Scientific: TRUEPERELLA PYOGENES
    Organism Taxid: 1661

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2CA8Ligand/IonCALCIUM ION
3GLC3Ligand/IonALPHA-D-GLUCOSE
4PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:66 , GLU B:231 , HOH B:1008 , HOH B:1017 , HOH B:1169 , HOH B:1260binding site for residue CA B 805
02AC2SOFTWAREASP B:534 , HOH B:1020 , HOH B:1283 , HOH B:1417 , HOH B:1433 , HOH B:1495 , HOH B:1505binding site for residue CA B 806
03AC3SOFTWAREALA B:133 , HOH B:970 , HOH B:1246 , HOH B:1370 , HOH B:1372 , HOH B:1378binding site for residue CA B 807
04AC4SOFTWAREASN B:349 , GLU B:700 , HOH B:994 , HOH B:1066 , HOH B:1347binding site for residue CA B 808
05AC5SOFTWAREGLU B:76 , LEU B:79 , ASP B:282 , HOH B:1059 , HOH B:1197 , HOH B:1339 , HOH B:1415binding site for residue CA B 809
06AC6SOFTWAREASP B:396 , ASP B:620 , HOH B:1285binding site for residue CA B 810
07AC7SOFTWARESER B:363 , HOH B:930 , HOH B:999 , HOH B:1035 , HOH B:1501binding site for residue CA B 811
08AC8SOFTWAREASP B:253 , LEU B:254 , ASP B:486 , HOH B:1123 , HOH B:1323 , HOH B:1369binding site for residue CA B 812
09AC9SOFTWARETRP B:237 , GLU B:251 , HOH B:1275binding site for residue PGE B 813
10AD1SOFTWAREHIS B:78 , GLU B:198 , TYR B:200 , TRP B:429 , TRP B:430 , ARG B:516 , ASP B:532 , PHE B:565 , GLU B:593 , PHE B:594 , GLC B:803 , BGC B:804 , HOH B:919 , HOH B:947binding site for Poly-Saccharide residues GLC B 801 through GLC B 802
11AD2SOFTWAREASN B:302 , GLU B:330 , ALA B:331 , GLU B:335 , PHE B:338 , TRP B:387 , GLN B:388 , PRO B:390 , TRP B:430 , LYS B:465 , THR B:466 , GLY B:468 , TYR B:496 , ARG B:516 , TRP B:529 , ASP B:532 , PHE B:565 , HIS B:591 , GLC B:801 , GLC B:802 , HOH B:919 , HOH B:921 , HOH B:932 , HOH B:977 , HOH B:1026 , HOH B:1158binding site for Poly-Saccharide residues ASP B 467 through BGC B 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I0F)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr B:21 -Pro B:22
2Leu B:599 -Pro B:600

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I0F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I0F)

(-) Exons   (0, 0)

(no "Exon" information available for 5I0F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:729
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee................ee.........eeeeeee...eeeeeeeee....eeeee.eee..hhhhhhhhh.hhhhh...........eeeeeee.......eeeeeeeee....eee...eee...eee.....eeee..........eeee....eeeeeeeee.....eeeeee...........eeee.......hhhhhh....eeeeeeee.....eeeeee.....eeeee......eeeeeee......eeeeeeeeehhhhhhhhhhhhhh.....hhhhh.eeee.....hhhhhhhhhhhhhhhh....eeee.........................hhhhh.........hhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhhhh...........................hhhhhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhhhhhhhhhhh.....eee.....hhhhh.eee......hhhhhhhhhhhhhhhhh.....eeee.........hhhhhhhhhhhhhh..eeee..............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhh.hhhhhhh...eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i0f B   1 MITHRPRGIEHPYARSLDQLYPAIPIAGQSLTIGATTSGPCSRMRCFVLWPEHEQVFDMSPVNGTDSDAALLAGGEGHLAAAQQAALDADNGWQTSIPHLPDQDATYYFEALTLDGRTETSESFPLTPSHWSAEPVGHIDIDGDRFIPDSPLWLVSSAGTHRVKFALRIEGDEHVVGFGERYDQLDQRGLRLDSVVFEQYKAQGKHHRTYLPMPFAQVVNEAGRAWGFHVETTRRTWYDVAATVSDRILIEVDLGFKTPVVRVNTWSGSPTDVLNGFLDVAGRPAEMPEWIFGLWASGNEWNTQSLVMEQMDRHRNEGIPVSVVVIEAWSDEEGFTIFRDARYVPNQGQPHRGPDFTYPSDGAWPDPAGMIRELHERGIRVILWQIPLQKTDDDLGPEALAQGNALIASGHVVKEPDGTPYKNRGWWFPNALMPDLSTEAGRQWWTEQRRYLVEDLDIDGFKTDGGEHAWGSDLRYEDGRRGDEGNNLYPVNYARAYGDLLRSAGKYPVTFSRSGFTGSQAHGLYWAGDEDSTWEAFRSSITAGITAGACGILYWGWDLAGFSGPVPEAELYARAFAAATFMPIMQYHSEFHHHELPLRDRTPWNVAEQTGCGELIDLARHYTRVREALRPYLVAQTRQCLQTGKPLMRAMFYDHADDPEIWAHPRQYMLGDELLINPVTAPGATTWTTYLPEGQWEDYWSGEVSEGGHLVTRAVGWDIIPVYRRVGAA 732
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     ||263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723         
                                                                                                                                                                                                                                                                                         256|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                                                                                                                                          260
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I0F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I0F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I0F)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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        X4QP62_9ACTO | X4QP62: 5f7s 5i0e 5i0g

(-) Related Entries Specified in the PDB File

5i0d 5i0e 5i0g