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(-) Description

Title :  CYCLOALTERNAN-DEGRADING ENZYME FROM TRUEPERELLA PYOGENES IN COMPLEX WITH ISOMALTOSE
 
Authors :  S. H. Light, G. Minasov, W. F. Anderson, Center For Structural Genom Infectious Diseases (Csgid)
Date :  03 Feb 16  (Deposition) - 14 Dec 16  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  B
Keywords :  Hydrolase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, L. A. Cahoon, K. V. Mahasenan, M. Lee, B. Boggess, A. S. Halavaty, S. Mobashery, N. E. Freitag, W. F. Anderson
Transferase Versus Hydrolase: The Role Of Conformational Flexibility In Reaction Specificity.
Structure V. 25 295 2017
PubMed-ID: 28089449  |  Reference-DOI: 10.1016/J.STR.2016.12.007

(-) Compounds

Molecule 1 - GLYCOSIDE HYDROLASE FAMILY 31
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CQ11_05330
    Organism Scientific: TRUEPERELLA PYOGENES
    Organism Taxid: 1661

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2GLC2Ligand/IonALPHA-D-GLUCOSE
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:396 , ASP B:620binding site for residue CA B 803
2AC2SOFTWAREASN B:349 , GLU B:700 , HOH B:905 , HOH B:1088binding site for residue CA B 804
3AC3SOFTWAREGLU B:379binding site for residue CA B 805
4AC4SOFTWAREPRO B:323 , VAL B:324 , ARG B:380 , GLY B:381 , HOH B:951 , HOH B:1014binding site for residue MES B 806
5AC5SOFTWAREASN B:302 , GLU B:330 , ALA B:331 , GLU B:335 , PHE B:338 , TRP B:430 , LYS B:465 , ASP B:467 , ARG B:516 , TRP B:529 , ASP B:532 , PHE B:565 , HIS B:591 , HOH B:916 , HOH B:936 , HOH B:938 , HOH B:949 , HOH B:1043binding site for Poly-Saccharide residues GLC B 801 through GLC B 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I0E)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr B:21 -Pro B:22
2Leu B:599 -Pro B:600

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I0E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I0E)

(-) Exons   (0, 0)

(no "Exon" information available for 5I0E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:703
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee................ee.........eeeeeee...eeeeeeeee....eeeee.ee..eeeeee.......eeeeeeeee....eee...eee...eee.....eeee..........eeeee..eeeeeeeeee.....eeeeee...........eeee.......hhhhhh....eeeeeeee.....eeeeee.....eeeee......eeeeeee........eeeeeeeeehhhhhhhhhhhhhh.....hhhhh.eeee.....hhhhhhhhhhhhhhhh....eeee.........................hhhhh.........hhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhhhhhhhhhhh......ee.....hhhhh.eee......hhhhhhhhhhhhhhhhh.....eeee.........hhhhhhhhhhhhhh..eeee..............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhh.hhhhhhh...eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i0e B   1 MITHRPRGIEHPYARSLDQLYPAIPIAGQSLTIGATTSGPCSRMRCFVLWPEHEQVFDMSPVNGWQTSIPHLPDQDATYYFEALTLDGRTETSESFPLTPSHWSAEPVGHIDIDGDRFIPDSPLWLVSSAGTHRVKFALRIEGDEHVVGFGERYDQLDQRGLRLDSVVFEQYKAQGKHHRTYLPMPFAQVVNEAGRAWGFHVETTRRTWYDVAATVSDRILIEVDLGFEAKTPVVRVNTWSGSPTDVLNGFLDVAGRPAEMPEWIFGLWASGNEWNTQSLVMEQMDRHRNEGIPVSVVVIEAWSDEEGFTIFRDARYVPNQGQPHRGPDFTYPSDGAWPDPAGMIRELHERGIRVILWQIPLQKTDDDLGPEALAQGNALIASGHVVKEPDGTPYKNRGWWFPNALMPDLSTEAGRQWWTEQRRYLVEDLDIDGFKTDGGEHAWGSDLRYEDGRRGDEGNNLYPVNYARAYGDLLRSAGKYPVTFSRSGFTGSQAHGLYWAGDEDSTWEAFRSSITAGITAGACGILYWGWDLAGFSGPVPEAELYARAFAAATFMPIMQYHSEFHHHELPLRDRTPWNVAEQTGCGELIDLARHYTRVREALRPYLVAQTRQCLQTGKPLMRAMFYDHADDPEIWAHPRQYMLGDELLINPVTAPGATTWTTYLPEGQWEDYWSGEVSEGGHLVTRAVGWDIIPVYRRVGAA 732
                                    10        20        30        40        50        60 ||     98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258|      269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729   
                                                                                        62|                                                                                                                                                                    258|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                         91                                                                                                                                                                     260
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I0E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I0E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I0E)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        X4QP62_9ACTO | X4QP62: 5f7s 5i0f 5i0g

(-) Related Entries Specified in the PDB File

5i0d 5i0f 5i0g