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(-) Description

Title :  CYCLOALTERNAN-DEGRADING ENZYME FROM TRUEPERELLA PYOGENES
 
Authors :  S. H. Light, W. F. Anderson, Center For Structural Genomics Of Inf Diseases (Csgid)
Date :  08 Dec 15  (Deposition) - 30 Dec 15  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, L. A. Cahoon, A. S. Halavaty, N. E. Freitag, W. F. Anderson
Structure To Function Of An Alpha-Glucan Metabolic Pathway That Promotes Listeria Monocytogenes Pathogenesis.
Nat Microbiol V. 2 16202 2016
PubMed-ID: 27819654  |  Reference-DOI: 10.1038/NMICROBIOL.2016.202

(-) Compounds

Molecule 1 - GLYCOSIDE HYDROLASE FAMILY 31
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Gene: CQ11_05330
    Organism Scientific: TRUEPERELLA PYOGENES
    Organism Taxid: 1661

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1CA9Ligand/IonCALCIUM ION
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3PGE2Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3PGE-1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
3PGE2Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:645 , HOH A:1201 , HOH B:951 , HOH B:1065 , HOH B:1101 , HOH B:1236binding site for residue CA A 801
02AC2SOFTWAREALA A:133 , HOH A:934 , HOH A:1183 , HOH A:1191binding site for residue CA A 802
03AC3SOFTWAREASN A:349 , HOH A:942 , HOH A:966 , HOH A:1040binding site for residue CA A 803
04AC4SOFTWAREHOH A:1034 , HOH A:1035 , HOH A:1068 , HOH A:1176 , HOH A:1208 , HOH B:979 , HOH B:1186binding site for residue CA A 804
05AC5SOFTWAREASP A:467 , HOH A:947 , HOH A:1097 , HOH A:1132binding site for residue CA A 805
06AC6SOFTWAREGLU A:376 , GLU A:379 , HOH A:1049 , HOH A:1203 , HOH A:1212binding site for residue CA A 806
07AC7SOFTWAREGLU A:251binding site for residue PEG A 807
08AC8SOFTWAREGLU B:376 , GLU B:379 , HOH B:1055 , HOH B:1184 , HOH B:1224binding site for residue CA B 801
09AC9SOFTWAREALA B:133 , HOH B:992 , HOH B:1161 , HOH B:1226binding site for residue CA B 802
10AD1SOFTWAREASP B:467 , HOH B:1043binding site for residue CA B 803
11AD2SOFTWAREARG B:162 , TRP B:237 , GLU B:251 , PGE B:805binding site for residue PGE B 804
12AD3SOFTWARETYR B:13 , ARG B:191 , LEU B:192 , ASP B:193 , PGE B:804binding site for residue PGE B 805

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F7S)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:21 -Pro A:22
2Leu A:599 -Pro A:600
3Tyr B:21 -Pro B:22
4Leu B:599 -Pro B:600

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F7S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F7S)

(-) Exons   (0, 0)

(no "Exon" information available for 5F7S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:701
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee................ee.........eeeeeee...eeeeeeeee....eeeee.eee..eeeeee.......eeeeeeeee....eee...eee...eee.....eee...........eeeee..eeeeeeeeee.....eeeeee...........eeee.......hhhhhh....eeeeeeee.....eeeeee.....eeeee......eeeeeee.......eeeeeeeeehhhhhhhhhhhhhh.....hhhhh.eeee.....hhhhhhhhhhhhhhhh....eeee.........................hhhhh.........hhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhhhh...........................hhhhhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhhhhhhhhhhh.....eee.....hhhhh.eee......hhhhhhhhhhhhhhhhh.....eeee.........hhhhhhhhhhhhhh..eee...............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhh.hhhhhhh...eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f7s A   1 MITHRPRGIEHPYARSLDQLYPAIPIAGQSLTIGATTSGPCSRMRCFVLWPEHEQVFDMSPVNNGWQTSIPHLPDQDATYYFEALTLDGRTETSESFPLTPSHWSAEPVGHIDIDGDRFIPDSPLWLVSSAGTHRVKFALRIEGDEHVVGFGERYDQLDQRGLRLDSVVFEQYKAQGKHHRTYLPMPFAQVVNEAGRAWGFHVETTRRTWYDVAATVSDRILIEVDLGFEATPVVRVNTWSGSPTDVLNGFLDVAGRPAEMPEWIFGLWASGNEWNTQSLVMEQMDRHRNEGIPVSVVVIEAWSDEEGFTIFRDARYVPNQGQPHRGPDFTYPSDGAWPDPAGMIRELHERGIRVILWQIPLQKTDDDLGPEALAQGNALIASGHVVKEPDGTPYKNRGWWFPNALMPDLSTEAGRQWWTEQRRYLVEDLDIDGFKTDGGEHAWGSDLRYEDGRRGDEGNNLYPVNYARAYGDLLRSAGKYPVTFSRSGFTGSQAHGLYWAGDEDSTWEAFRSSITAGITAGACGILYWGWDLAGFSGPVPEAELYARAFAAATFMPIMQYHSEFHHHELPLRDRTPWNVAEQTGCGELIDLARHYTRVREALRPYLVAQTRQCLQTGKPLMRAMFYDHADDPEIWAHPRQYMLGDELLINPVTAPGATTWTTYLPEGQWEDYWSGEVSEGGHLVTRAVGWDIIPVYRRVG 730
                                    10        20        30        40        50        60  ||    97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257||     269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729 
                                                                                         63|                                                                                                                                                                    258|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                                                                                          91                                                                                                                                                                     261                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:702
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee................ee.........eeeeeee...eeeeeeeeee..eeeeee.ee..eeeeee.......eeeeeeeee....eee...eee...eee.....eee...........eeeee..eeeeeeeeee.....eeeeee...........eeee.......hhhhhh....eeeeeeee.....eeeeee.....eeeee......eeeeeee.........eeeeeeeeehhhhhhhhhhhhhh.....hhhhh.eeee.....hhhhhhhhhhhhhhh.....eeee.........................hhhhh.........hhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhhhhhhhhhhh.....eee.....hhhhh.eee......hhhhhhhhhhhhhhhhh.....eeee.........hhhhhhhhhhhhhh..eeee..............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhh.hhhhhhh...eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5f7s B   1 MITHRPRGIEHPYARSLDQLYPAIPIAGQSLTIGATTSGPCSRMRCFVLWPEHEQVFDMSPVNGWQTSIPHLPDQDATYYFEALTLDGRTETSESFPLTPSHWSAEPVGHIDIDGDRFIPDSPLWLVSSAGTHRVKFALRIEGDEHVVGFGERYDQLDQRGLRLDSVVFEQYKAQGKHHRTYLPMPFAQVVNEAGRAWGFHVETTRRTWYDVAATVSDRILIEVDLGFEAEKTPVVRVNTWSGSPTDVLNGFLDVAGRPAEMPEWIFGLWASGNEWNTQSLVMEQMDRHRNEGIPVSVVVIEAWSDEEGFTIFRDARYVPNQGQPHRGPDFTYPSDGAWPDPAGMIRELHERGIRVILWQIPLQKTDDDLGPEALAQGNALIASGHVVKEPDGTPYKNRGWWFPNALMPDLSTEAGRQWWTEQRRYLVEDLDIDGFKTDGGEHAWGSDLRYEDGRRGDEGNNLYPVNYARAYGDLLRSAGKYPVTFSRSGFTGSQAHGLYWAGDEDSTWEAFRSSITAGITAGACGILYWGWDLAGFSGPVPEAELYARAFAAATFMPIMQYHSEFHHHELPLRDRTPWNVAEQTGCGELIDLARHYTRVREALRPYLVAQTRQCLQTGKPLMRAMFYDHADDPEIWAHPRQYMLGDELLINPVTAPGATTWTTYLPEGQWEDYWSGEVSEGGHLVTRAVGWDIIPVYRRVG 730
                                    10        20        30        40        50        60 ||     98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728  
                                                                                        62|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
                                                                                         91
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F7S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F7S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F7S)

(-) Gene Ontology  (7, 7)

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        X4QP62_9ACTO | X4QP62: 5i0e 5i0f 5i0g

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