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(-) Description

Title :  CYCLOALTERNAN-DEGRADING ENZYME FROM TRUEPERELLA PYOGENES IN COMPLEX WITH CYCLOALTERNAN
 
Authors :  S. H. Light, G. Minasov, W. F. Anderson, Center For Structural Genom Infectious Diseases (Csgid)
Date :  03 Feb 16  (Deposition) - 14 Dec 16  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  B
Keywords :  Hydrolase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, L. A. Cahoon, K. V. Mahasenan, M. Lee, B. Boggess, A. S. Halavaty, S. Mobashery, N. E. Freitag, W. F. Anderson
Transferase Versus Hydrolase: The Role Of Conformational Flexibility In Reaction Specificity.
Structure V. 25 295 2017
PubMed-ID: 28089449  |  Reference-DOI: 10.1016/J.STR.2016.12.007

(-) Compounds

Molecule 1 - GLYCOSIDE HYDROLASE FAMILY 31
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Gene: CQ11_05330
    Mutation: YES
    Organism Scientific: TRUEPERELLA PYOGENES
    Organism Taxid: 1661

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1GLC4Ligand/IonALPHA-D-GLUCOSE
2SIN1Ligand/IonSUCCINIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:541 , ARG B:669binding site for residue SIN B 805
2AC2SOFTWAREHIS B:78 , GLU B:198 , ASN B:302 , GLU B:330 , ALA B:331 , GLU B:335 , TRP B:429 , TRP B:430 , PHE B:431 , LYS B:465 , ASP B:467 , ARG B:516 , PHE B:565 , HIS B:591 , GLU B:593 , HOH B:932binding site for Poly-Saccharide residues GLC B 801 through GLC B 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I0G)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr B:21 -Pro B:22
2Leu B:599 -Pro B:600

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I0G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I0G)

(-) Exons   (0, 0)

(no "Exon" information available for 5I0G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:730
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee................ee.........eeeeeee...eeeeeeeee....eeeee.ee.hhhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeee.......eeeeeeeee....eee...eee...eee.....eeee..........eeeee..eeeeeeeeee.....eeeeee...........eeee.......hhhhhh....eeeeeeee.....eeeeee.....eeeee......eeeeeee.......eeeeeeeeehhhhhhhhhhhhhh.....hhhhhh.eee.....hhhhhhhhhhhhhhh.....eeee.........................hhhhh.........hhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhhhhhhhhhhh.....eee.....hhhhh.eee......hhhhhhhhhhhhhhhhh.....eeee.........hhhhhhhhhhhhh...eeee..............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhh.hhhhhhh...eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i0g B   1 MITHRPRGIEHPYARSLDQLYPAIPIAGQSLTIGATTSGPCSRMRCFVLWPEHEQVFDMSPVNGTDSDAALLAGGEGHLAAAQQAALDADNGWQTSIPHLPDQDATYYFEALTLDGRTETSESFPLTPSHWSAEPVGHIDIDGDRFIPDSPLWLVSSAGTHRVKFALRIEGDEHVVGFGERYDQLDQRGLRLDSVVFEQYKAQGKHHRTYLPMPFAQVVNEAGRAWGFHVETTRRTWYDVAATVSDRILIEVDLGFEKTPVVRVNTWSGSPTDVLNGFLDVAGRPAEMPEWIFGLWASGNEWNTQSLVMEQMDRHRNEGIPVSVVVIEAWSDEEGFTIFRDARYVPNQGQPHRGPDFTYPSDGAWPDPAGMIRELHERGIRVILWQIPLQKTDDDLGPEALAQGNALIASGHVVKEPDGTPYKNRGWWFPNALMPDLSTEAGRQWWTEQRRYLVEDLDIDGFKTDGGEHAWGSDLRYEDGRRGDEGNNLYPVNYARAYGDLLRSAGKYPVTFSRSGFTGSQAHGLYWAGAEDSTWEAFRSSITAGITAGACGILYWGWDLAGFSGPVPEAELYARAFAAATFMPIMQYHSEFHHHELPLRDRTPWNVAEQTGCGELIDLARHYTRVREALRPYLVAQTRQCLQTGKPLMRAMFYDHADDPEIWAHPRQYMLGDELLINPVTAPGATTWTTYLPEGQWEDYWSGEVSEGGHLVTRAVGWDIIPVYRRVGAA 732
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     ||262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732
                                                                                                                                                                                                                                                                                         256|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                          259
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I0G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I0G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I0G)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        X4QP62_9ACTO | X4QP62: 5f7s 5i0e 5i0f

(-) Related Entries Specified in the PDB File

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