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(-) Description

Title :  CRYSTAL STRUCTURE OF SHAFT PILIN SPAA FROM LACTOBACILLUS RHAMNOSUS GG - D295N MUTANT
 
Authors :  P. Chaurasia, S. Pratap, I. Von Ossowski, A. Palva, V. Krishnan
Date :  27 Jan 16  (Deposition) - 20 Jul 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Pilin, Spaa, Probiotic, Isopeptide, Spacba Pili, Adhesin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Chaurasia, S. Pratap, I. Von Ossowski, A. Palva, V. Krishnan
New Insights About Pilus Formation In Gut-Adapted Lactobacillus Rhamnosus Gg From The Crystal Structure Of Th Spaa Backbone-Pilin Subunit
Sci Rep V. 6 28664 2016
PubMed-ID: 27349405  |  Reference-DOI: 10.1038/SREP28664

(-) Compounds

Molecule 1 - CELL SURFACE PROTEIN SPAA
    Atcc: 53103
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)/PLYSS
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 35-302
    Gene: LRHM_0426
    Mutation: YES
    Organism Scientific: LACTOBACILLUS RHAMNOSUS GG
    Organism Taxid: 568703
    Strain: GG

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HTS)

(-) Sites  (0, 0)

(no "Site" information available for 5HTS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HTS)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu A:156 -Pro A:157
2Leu B:156 -Pro B:157
3Leu C:156 -Pro C:157
4Leu D:156 -Pro D:157
5Leu E:156 -Pro E:157
6Leu F:156 -Pro F:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HTS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HTS)

(-) Exons   (0, 0)

(no "Exon" information available for 5HTS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.eee.....................eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..........eeee.........eeee..eee....eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee.....eeeeeeee....ee....eeee....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hts A  39 TTQNVVLTKYGFDIDRATDQIWTGDGAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVETNVPDGYDAAANTDFKADNSSSDILNAPSGILP 302
                                    48  ||    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                       51|                                                                                                                                                                                                                                                     
                                        57                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.eee..........................eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..........eeee.........eeee..eee....eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee.....eeeeeeee....ee....eeee....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hts B  39 TTQNVVLTKYGFDKDVTAIDRATDQIWTGDGAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVETNVPDGYDAAANTDFKADNSSSDILNAPSGILP 302
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298    


Chain C from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.eee...................eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..........eeee.........eeee..eee....eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee.....eeeeeeee....ee....eeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hts C  39 TTQNVVLTKYGFDRATDQIWTGDGAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVETNVPDGYDAAANTDFKADNSSSDILNAPSG 299
                                    48  ||    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295    
                                       51|                                                                                                                                                                                                                                                
                                        59                                                                                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.eee.....................eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..........eeee.........eeee..eee....eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee.....eeeeeeee....ee....eeee....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hts D  38 TTTQNVVLTKYGFDIDRATDQIWTGDGAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVETNVPDGYDAAANTDFKADNSSSDILNAPSGILP 302
                                    47   ||   62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
                                        51|                                                                                                                                                                                                                                                     
                                         57                                                                                                                                                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.eee........eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..........eeee.........eeee..eee....eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee.....eeeeeeee....ee....eeee....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hts E  39 TTQNVVLTKYGFDAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVETNVPDGYDAAANTDFKADNSSSDILNAPSGIL 301
                                    48  ||    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296     
                                       51|                                                                                                                                                                                                                                       
                                        70                                                                                                                                                                                                                                       


Chain F from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.eee...eeeeeehhhhhhhhhhhh........eeeeee.....eeeeee..eee.....eee.eeeeeeee..........eeee.........eeee..eee....eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee.....eeeeeeee....ee....eeee....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hts F  40 TQNVVLTKYGFQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVETNVPDGYDAAANTDFKADNSSSDILNAPSGILP 302
                                    49||      82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
                                     50|                                                                                                                                                                                                                                    
                                      74
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HTS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HTS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HTS)

(-) Gene Ontology  (2, 2)

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    Leu A:156 - Pro A:157   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C7T9P4_LACRG | C7T9P4: 5f44 5faa 5fgr 5fgs 5fie 5hbb 5hdl 5j4m

(-) Related Entries Specified in the PDB File

5f44 5F44 CONTAINS WT PROTEIN.
5faa 5FAA CONTAINS C-TERMINAL DOMAIN OF WT PROTEIN IN I422 SPACE GROUP
5fgr 5FGR CONTAINS C-TERMINAL DOMAIN OF WT PROTEIN WITH YB IONS
5fgs 5FGS CONTAINS C-TERMINAL DOMAIN OF WT PROTEIN WITH ZN IONS
5fie 5FIE CONTAINS N-TERMINAL DOMAIN OF THE SAME PROTEIN.
5hbb 5HBB CONTAINS E139A MUTANT OF THE SAME PROTEIN.
5hdl 5HDL CONTAINS E269A MUTANT OF THE SAME PROTEIN.
5j4m 5J4M CONTAINS E269A/D295N MUTANT OF THE SAME PROTEIN.