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(-) Description

Title :  CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF SHAFT PILIN SPAA FROM LACTOBACILLUS RHAMNOSUS GG, - I422 SPACE GROUP
 
Authors :  P. Chaurasia, S. Pratap, I. Von Ossowski, A. Palva, V. Krishnan
Date :  11 Dec 15  (Deposition) - 20 Jul 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Pilin, Spaa, Probiotic, Isopeptide, Spacba Pili, Adhesin, Adhesion, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Chaurasia, S. Pratap, I. Von Ossowski, A. Palva, V. Krishnan
New Insights About Pilus Formation In Gut-Adapted Lactobacillus Rhamnosus Gg From The Crystal Structure Of Th Spaa Backbone-Pilin Subunit
Sci Rep V. 6 28664 2016
PubMed-ID: 27349405  |  Reference-DOI: 10.1038/SREP28664

(-) Compounds

Molecule 1 - CELL SURFACE PROTEIN SPAA
    Atcc: 53103
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)/PLYSS
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 35-302
    Gene: LRHM_0426
    Organism Scientific: LACTOBACILLUS RHAMNOSUS GG
    Organism Taxid: 568703
    Strain: GG

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:201 , SER A:203 , ASN A:281 , HOH A:503 , HOH A:509binding site for residue EDO A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FAA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FAA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FAA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FAA)

(-) Exons   (0, 0)

(no "Exon" information available for 5FAA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee......eeeeeee....ee....eee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5faa A 176 TTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVETNVPDGYDAAANTDFKADNSSSDILDAPS 298
                                   185       195       205       215       225       235       245       255       265       275       285       295
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FAA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FAA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FAA)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C7T9P4_LACRG | C7T9P4: 5f44 5fgr 5fgs 5fie 5hbb 5hdl 5hts 5j4m

(-) Related Entries Specified in the PDB File

5f44 5F44 ENTRY IS NEAR FULL-LENGTH OF SAME PROTEIN
5fgr 5FGR CONTAINS C-TERMINAL DOMAIN OF WT PROTEIN WITH YB IONS
5fgs 5FGS CONTAINS C-TERMINAL DOMAIN OF WT PROTEIN WITH ZN IONS
5fie 5FIE CONTAINS N-TERMINAL DOMAIN OF THE SAME PROTEIN.
5hbb 5HBB CONTAINS E139A MUTANT OF THE SAME PROTEIN.
5hdl 5HDL CONTAINS E269A MUTANT OF THE SAME PROTEIN.
5hts 5HTS CONTAINS D295N MUTANT OF THE SAME PROTEIN.
5j4m 5J4M CONTAINS E269A/D295N MUTANT OF THE SAME PROTEIN.