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(-) Description

Title :  CRYSTAL STRUCTURE OF SHAFT PILIN SPAA FROM LACTOBACILLUS RHAMNOSUS GG - E269A MUTANT
 
Authors :  P. Chaurasia, S. Pratap, I. Von Ossowski, A. Palva, V. Krishnan
Date :  05 Jan 16  (Deposition) - 20 Jul 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Pilin, Spaa, Probiotic, Isopeptide, Spacba Pili, Adhesin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Chaurasia, S. Pratap, I. Von Ossowski, A. Palva, V. Krishnan
New Insights About Pilus Formation In Gut-Adapted Lactobacillus Rhamnosus Gg From The Crystal Structure Of Th Spaa Backbone-Pilin Subunit
Sci Rep V. 6 28664 2016
PubMed-ID: 27349405  |  Reference-DOI: 10.1038/SREP28664

(-) Compounds

Molecule 1 - CELL SURFACE PROTEIN SPAA
    Atcc: 53103
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)/PLYSS
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 35-302
    Gene: LRHM_0426
    Mutation: YES
    Organism Scientific: LACTOBACILLUS RHAMNOSUS GG
    Organism Taxid: 568703
    Strain: GG

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HDL)

(-) Sites  (0, 0)

(no "Site" information available for 5HDL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HDL)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Leu A:156 -Pro A:157
2Leu B:156 -Pro B:157
3Leu C:156 -Pro C:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HDL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HDL)

(-) Exons   (0, 0)

(no "Exon" information available for 5HDL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.ee.....................ee....eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..........eeee..........eee.........eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee.....eeeeeeee..........eeee....eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hdl A  38 TTTQNVVLTKYGFDKDVTAIDRATDQIWTGDGAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVATNVPDGYDAAANTDFKADNSSSDILDAPSGILP 302
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297     


Chain B from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.eee..........................eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..........eeee..........eee..eee....eeeeeeeee..........eeeee.....eeeeee...........eehhhhhheeeeeehhhhh..ee.....eeeeeee.....eeeeeeee..........eeee....eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hdl B  38 TTTQNVVLTKYGFDKDVTAIDRATDQIWTGDGAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVATNVPDGYDAAANTDFKADNSSSDILDAPSGILP 302
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297     


Chain C from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.eee..........................eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..........eeee..........eee..eee....eeeeeeeee..........eeeee.....eeeee............eehhhhhh.eeeeehhhhh..ee.....eeeeeee.....eeeeeeee..........eeee....eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hdl C  38 TTTQNVVLTKYGFDKDVTAIDRATDQIWTGDGAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYERTFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAESDATVFTSDKSGKFGLNGFADNTTTYTAVATNVPDGYDAAANTDFKADNSSSDILDAPSGILP 302
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HDL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HDL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HDL)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:156 - Pro A:157   [ RasMol ]  
    Leu B:156 - Pro B:157   [ RasMol ]  
    Leu C:156 - Pro C:157   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C7T9P4_LACRG | C7T9P4: 5f44 5faa 5fgr 5fgs 5fie 5hbb 5hts 5j4m

(-) Related Entries Specified in the PDB File

5f44 5F44 CONTAINS WT PROTEIN.
5faa 5FAA CONTAINS C-TERMINAL DOMAIN OF WT PROTEIN IN I422 SPACE GROUP
5fgr 5FGR CONTAINS C-TERMINAL DOMAIN OF WT PROTEIN IN P21212 SPACE GROUP WITH YB IONS
5fgs 5FGS CONTAINS C-TERMINAL DOMAIN OF WT PROTEIN IN P21212 SPACE GROUP WITH ZN IONS
5fie 5FIE CONTAINS N-TERMINAL DOMAIN OF THE SAME PROTEIN.
5hbb 5HBB CONTAINS E139A MUTANT OF THE SAME PROTEIN.
5hts 5HTS CONTAINS D295N MUTANT OF THE SAME PROTEIN.
5j4m 5J4M CONTAINS E269A/D295N MUTANT OF THE SAME PROTEIN.