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(-) Description

Title :  CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF SHAFT PILIN SPAA FROM LACTOBACILLUS RHAMNOSUS GG
 
Authors :  P. Chaurasia, S. Pratap, I. Von Ossowski, A. Palva, V. Krishnan
Date :  23 Dec 15  (Deposition) - 20 Jul 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Pilin, Spaa, Probiotic, Isopeptide, Spacba Pili, Adhesin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Chaurasia, S. Pratap, I. Von Ossowski, A. Palva, V. Krishnan
New Insights About Pilus Formation In Gut-Adapted Lactobacillus Rhamnosus Gg From The Crystal Structure Of Th Spaa Backbone-Pilin Subunit
Sci Rep V. 6 28664 2016
PubMed-ID: 27349405  |  Reference-DOI: 10.1038/SREP28664

(-) Compounds

Molecule 1 - CELL SURFACE PROTEIN SPAA
    Atcc: 53103
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)/PLYSS
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 35-180
    Gene: LRHM_0426
    Organism Scientific: LACTOBACILLUS RHAMNOSUS GG
    Organism Taxid: 568703
    Strain: GG
    Synonym: PILUS PROTEIN SPAA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:106 , THR A:116 , HOH A:367 , HOH A:389 , HOH A:397 , HOH A:402binding site for residue NA A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FIE)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asn A:141 -Pro A:142
2Leu A:156 -Pro A:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FIE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FIE)

(-) Exons   (0, 0)

(no "Exon" information available for 5FIE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..............................eeeeeehhhhhhhhhhhh........eeeeee.....eeeeeee.eee.....eee.eeeeeeee..hhhhh...eeee.........eeee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fie A  39 TTQNVVLTKYGFDKDVTAIDRATDQIWTGDGAKPLQGVDFTIYNVTANYWASPKDYKGSFDSAPVAATGTTNDKGQLTQALPIQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYER 180
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FIE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FIE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FIE)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C7T9P4_LACRG | C7T9P4: 5f44 5faa 5fgr 5fgs 5hbb 5hdl 5hts 5j4m

(-) Related Entries Specified in the PDB File

5f44 5F44 CONTAINS NEAR FULL-LENGTH OF SAME PROTEIN
5faa 5FAA CONTAINS C-TERMINAL DOMAIN OF SAME PROTEIN IN I422 SPACE GROUP
5fgr 5FGR CONTAINS C-TERMINAL DOMAIN OF SAME PROTEIN IN P21212 SPACE GROUP WITH YB IONS
5fgs 5FGS CONTAINS C-TERMINAL DOMAIN OF SAME PROTEIN IN P21212 SPACE GROUP WITH ZN IONS
5hbb 5HBB CONTAINS E139A MUTANT OF THE SAME PROTEIN.
5hdl 5HDL CONTAINS E269A MUTANT OF THE SAME PROTEIN.
5hts 5HTS CONTAINS D295N MUTANT OF THE SAME PROTEIN.
5j4m 5J4M CONTAINS E269A/D295N MUTANT OF THE SAME PROTEIN.