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(-) Description

Title :  GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH THIO-LINKED CELLOTRIOSE AT 1.56A
 
Authors :  A. S. Borisova, J. Stahlberg
Date :  14 Apr 15  (Deposition) - 23 Sep 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Cellobiohydrolase, Thio-Linked Cellotriose (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Borisova, E. V. Eneyskaya, K. S. Bobrov, S. Jana, A. Logachev, D. E. Polev, A. L. Lapidus, F. M. Ibatullin, U. Saleem, M. Sandgren, C. M. Payne, A. A. Kulminskaya, J. Stahlberg
Sequencing, Biochemical Characterization, Crystal Structure And Molecular Dynamics Of Cellobiohydrolase Cel7A From Geotrichum Candidum 3C.
Febs J. V. 282 4515 2015
PubMed-ID: 26367132  |  Reference-DOI: 10.1111/FEBS.13509

(-) Compounds

Molecule 1 - CELLOBIOHYDROLASE CEL7A
    Chains: A
    EC Number: 3.2.1.176
    Fragment: CATALYTIC DOMAIN, RESIDUES 18-455
    Organism Scientific: GALACTOMYCES CANDIDUM
    Organism Taxid: 1173061
    Strain: 3C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 19)

Asymmetric/Biological Unit (7, 19)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2GOL6Ligand/IonGLYCEROL
3MAN1Ligand/IonALPHA-D-MANNOSE
4MG1Ligand/IonMAGNESIUM ION
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PCA1Mod. Amino AcidPYROGLUTAMIC ACID
7SGC4Ligand/Ion4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:49 , TYR A:51 , THR A:52 , THR A:55 , TRP A:56 , ASN A:57 , NAG A:704BINDING SITE FOR RESIDUE GOL A1441
02AC2SOFTWARETHR A:85 , SER A:90 , ARG A:92 , ILE A:422BINDING SITE FOR RESIDUE GOL A1442
03AC3SOFTWAREVAL A:312 , VAL A:313 , THR A:438BINDING SITE FOR RESIDUE GOL A1443
04AC4SOFTWAREASP A:64 , THR A:65 , SER A:186 , GLN A:190 , ASN A:206 , MG A:1447 , HOH A:2093 , HOH A:2094 , HOH A:2395BINDING SITE FOR RESIDUE GOL A1444
05AC5SOFTWAREASN A:124 , THR A:294 , ASP A:295 , SER A:296 , GLY A:298BINDING SITE FOR RESIDUE GOL A1445
06AC6SOFTWARESER A:134 , LEU A:136 , PRO A:137 , SER A:220 , ASP A:231 , PRO A:276 , HOH A:2235BINDING SITE FOR RESIDUE GOL A1446
07AC7SOFTWAREASP A:64 , ASN A:206 , GOL A:1444 , HOH A:2092 , HOH A:2093 , HOH A:2094BINDING SITE FOR RESIDUE MG A1447
08AC8SOFTWARETHR A:48 , ASN A:57 , LEU A:60 , GOL A:1441 , HOH A:2060BINDING SITE FOR MONO-SACCHARIDE NAG A 704 BOUND TO ASN A 57
09AC9SOFTWAREGLY A:205 , ASN A:206 , VAL A:237 , CYS A:238 , ASN A:239 , SER A:414 , HOH A:2094 , HOH A:2210 , HOH A:2383BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 701 THROUGH MAN A 803 BOUND TO ASN A 206
10BC1SOFTWAREASN A:432 , HOH A:2397BINDING SITE FOR MONO-SACCHARIDE NAG A 705 BOUND TO ASN A 432
11BC2SOFTWAREGLN A:175 , GLU A:212 , THR A:246 , TYR A:247 , ARG A:251 , PRO A:258 , ASP A:259 , ARG A:267 , ASP A:343 , TRP A:371 , ASP A:373 , TRP A:380 , ARG A:399 , HOH A:2199 , HOH A:2200 , HOH A:2222 , HOH A:2224 , HOH A:2231 , HOH A:2264 , HOH A:2272 , HOH A:2362 , SGC A:3440BINDING SITE FOR POLY-SACCHARIDE RESIDUES SGC A2440 THROUGH BGC A2442
12BC3SOFTWAREASN A:37 , TRP A:38 , VAL A:104 , ARG A:107 , TYR A:145 , TYR A:171 , ASP A:173 , GLN A:175 , ASP A:179 , LEU A:180 , LYS A:181 , ASN A:200 , GLU A:212 , THR A:246 , TYR A:247 , ARG A:251 , PRO A:258 , ASP A:259 , SER A:369 , TRP A:371 , ASP A:373 , TRP A:380 , HOH A:2052 , HOH A:2081 , HOH A:2134 , HOH A:2135 , HOH A:2138 , HOH A:2199 , HOH A:2200 , HOH A:2205 , HOH A:2216 , HOH A:2222 , HOH A:2224 , HOH A:2231 , HOH A:2355 , HOH A:2356 , SGC A:2440BINDING SITE FOR POLY-SACCHARIDE RESIDUES SGC A3440 THROUGH BGC A3442
13BC4SOFTWAREILE A:3 , GLY A:4 , ASN A:37 , TRP A:38 , THR A:44 , ALA A:68 , GLN A:69 , CYS A:71 , ALA A:72 , LEU A:73 , VAL A:104 , ARG A:107 , ASN A:160 , ASN A:161 , LYS A:162 , ALA A:163 , ASP A:179 , LEU A:180 , LYS A:181 , PHE A:182 , ASN A:200 , SER A:272 , HOH A:2001 , HOH A:2004 , HOH A:2005 , HOH A:2006 , HOH A:2052 , HOH A:2081 , HOH A:2134 , HOH A:2135 , HOH A:2205 , HOH A:2216 , HOH A:2355 , HOH A:2356 , SGC A:3440BINDING SITE FOR DI-PEPTIDE PCA A 1 AND GLN A 2

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:19 -A:25
2A:50 -A:71
3A:61 -A:67
4A:138 -A:402
5A:172 -A:210
6A:176 -A:209
7A:238 -A:243
8A:261 -A:334

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:386 -Pro A:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZZT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZZT)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZZT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:434
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.........eeeeeee.....eeeeeeeeee.hhhh.eee.......ee..ee......hhhhhhhheee...hhhhhhheeee..eeeee.eee...eee.eeeeeeee..ee.ee....eeeeeeee.......eeeeeeee......hhhhh....hhhhhh.............ee..ee.....ee...ee..eeee..eeeeeee....eeeeee.......eeee.hhhh.............................ee....ee....eeeeeeeee.....eeeeeeeeee..eeee.............eehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhh........................hhhhhhhhh...eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zzt A   1 xQIGTLTTETHPPLTWQTCTSGGSCTTNNGKVVLDANWRWLHSTSGSTNCYTGNTWNTTLCPDDTTCAQNCALDGADYEGTYGITASGNSLRLNFVTNGSQKNVGSRTYLMKDDTHYQTFNLLNQEFTFDVDVSGLPCGLNGALYMVPMAADGGVSNEPNNKAGAQYGVGYCDSQCPRDLKFIAGSANVQGWEPANSGLGGNGSCCAELDIWEANSISAALTPHSADTVTQTVCNGDDCGGTYSNDRYSGTTDPDGCDFNSYRQGDTSFYGPGKTVDTNSKFTVVTQFLTDSSGNLNEIKRFYVQNGVVIPNSQSTIAGISGNSITQDYCTAQKQVFGDTNTWEDHGGFQSMTNAFKAGMVLVMSLWDDYYADMLWLDSVAYPTDADPSTPGVARGTCSTTSGVPSDIESSAASAYVIYSNIKVGPINSTFSGT 438
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    || 204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434    
                            |                                                                                                                                                                                               195|                                                                                                                                                                                                                                              
                            1-PCA                                                                                                                                                                                            200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZZT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZZT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZZT)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZZT)

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    Tyr A:386 - Pro A:387   [ RasMol ]  
 

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        A0A088T0J9_G | A0A088T0J9: 4zzu 4zzv 4zzw 5amp

(-) Related Entries Specified in the PDB File

4zzu GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH THIO- LINKED CELLOTETRAOSE AT 1.4A
4zzv GEOTRICHUM CANDIDUM CEL7A APO STRUCTURE AT 1.4A
4zzw GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH CELLOBIOSE AT 1.5A