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(-) Description

Title :  GEOTRICHUM CANDIDUM CEL7A APO STRUCTURE AT 1.4A
 
Authors :  A. S. Borisova, J. Stahlberg
Date :  14 Apr 15  (Deposition) - 23 Sep 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.37
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Cellobiohydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Borisova, E. V. Eneyskaya, K. S. Bobrov, S. Jana, A. Logachev, D. E. Polev, A. L. Lapidus, F. M. Ibatullin, U. Saleem, M. Sandgren, C. M. Payne, A. A. Kulminskaya, J. Stahlberg
Sequencing, Biochemical Characterization, Crystal Structure And Molecular Dynamics Of Cellobiohydrolase Cel7A From Geotrichum Candidum 3C.
Febs J. V. 282 4515 2015
PubMed-ID: 26367132  |  Reference-DOI: 10.1111/FEBS.13509

(-) Compounds

Molecule 1 - CELLOBIOHYDROLASE I
    Chains: A
    EC Number: 3.2.1.176
    Fragment: CATALYTIC DOMAIN, RESIDUES 18-455
    Organism Scientific: GALACTOMYCES CANDIDUM
    Organism Taxid: 1173061
    Strain: 3C
    Synonym: CELLOBIOHYDROLASE CEL7A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1MAN1Ligand/IonALPHA-D-MANNOSE
2MG1Ligand/IonMAGNESIUM ION
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PCA1Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:177 , ARG A:178 , ASP A:179 , TYR A:247 , HOH A:2353BINDING SITE FOR RESIDUE MG A 901
2AC2SOFTWARETHR A:48 , ASN A:57 , LEU A:60 , HOH A:2093 , HOH A:2135 , HOH A:2522 , HOH A:2523 , HOH A:2524BINDING SITE FOR MONO-SACCHARIDE NAG A 601 BOUND TO ASN A 57
3AC3SOFTWARESER A:196 , HOH A:2309 , HOH A:2467 , HOH A:2468 , HOH A:2528BINDING SITE FOR MONO-SACCHARIDE MAN A 706 BOUND TO SER A 196
4AC4SOFTWAREASP A:64 , GLN A:190 , GLY A:191 , GLY A:205 , ASN A:206 , HOH A:2146 , HOH A:2343 , HOH A:2525 , HOH A:2526 , HOH A:2527BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 701 THROUGH NAG A 702 BOUND TO ASN A 206
5AC5SOFTWAREASN A:432 , HOH A:2530 , HOH A:2532BINDING SITE FOR MONO-SACCHARIDE NAG A 801 BOUND TO ASN A 432
6AC6SOFTWAREILE A:3 , GLY A:4 , ALA A:68 , GLN A:69 , CYS A:71 , ALA A:72 , LEU A:73 , ASN A:160 , ASN A:161 , LYS A:162 , ALA A:163 , PHE A:182 , GLY A:185 , SER A:272 , HOH A:2001 , HOH A:2004 , HOH A:2005 , HOH A:2006BINDING SITE FOR DI-PEPTIDE PCA A 1 AND GLN A 2

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:19 -A:25
2A:50 -A:71
3A:61 -A:67
4A:138 -A:402
5A:172 -A:210
6A:176 -A:209
7A:238 -A:243
8A:261 -A:334

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:386 -Pro A:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZZV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZZV)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZZV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:436
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.........eeeeeeeee..eeeeeeeeeee.hhhh.eee.......ee..ee......hhhhhhhheee...hhhhhhheeee..eeeee.eee...eee.eeeeeeee..ee.ee....eeeeeeee.......eeeeeeee......hhhhh....hhhhhh.............ee..ee.....ee.......ee..eeee..eeeeeee....eeeeee.......eeee.hhhh.............................ee....ee....eeeeeeeee.....eeeeeeeeee..eeee.............eehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhh........................hhhhhhhhh...eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zzv A   1 xQIGTLTTETHPPLTWQTCTSGGSCTTNNGKVVLDANWRWLHSTSGSTNCYTGNTWNTTLCPDDTTCAQNCALDGADYEGTYGITASGNSLRLNFVTNGSQKNVGSRTYLMKDDTHYQTFNLLNQEFTFDVDVSGLPCGLNGALYMVPMAADGGVSNEPNNKAGAQYGVGYCDSQCPRDLKFIAGSANVQGWEPASNSANSGLGGNGSCCAELDIWEANSISAALTPHSADTVTQTVCNGDDCGGTYSNDRYSGTTDPDGCDFNSYRQGDTSFYGPGKTVDTNSKFTVVTQFLTDSSGNLNEIKRFYVQNGVVIPNSQSTIAGISGNSITQDYCTAQKQVFGDTNTWEDHGGFQSMTNAFKAGMVLVMSLWDDYYADMLWLDSVAYPTDADPSTPGVARGTCSTTSGVPSDIESSAASAYVIYSNIKVGPINSTFS 436
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                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                            1-PCA
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZZV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZZV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZZV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZZV)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A088T0J9_G | A0A088T0J9: 4zzt 4zzu 4zzw 5amp

(-) Related Entries Specified in the PDB File

4zzt GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH THIO- LINKED CELLOTRIOSE AT 1.56A
4zzu GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH THIO- LINKED CELLOTETRAOSE AT 1.4A
4zzw GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH CELLOBIOSE AT 1.5A