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(-) Description

Title :  GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH CELLOBIOSE AT 1.5A
 
Authors :  A. S. Borisova, J. Stahlberg
Date :  14 Apr 15  (Deposition) - 23 Sep 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Cellobiohydrolase, Cellobiose, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Borisova, E. V. Eneyskaya, K. S. Bobrov, S. Jana, A. Logachev, D. E. Polev, A. L. Lapidus, F. M. Ibatullin, U. Saleem, M. Sandgren, C. M. Payne, A. A. Kulminskaya, J. Stahlberg
Sequencing, Biochemical Characterization, Crystal Structure And Molecular Dynamics Of Cellobiohydrolase Cel7A From Geotrichum Candidum 3C.
Febs J. V. 282 4515 2015
PubMed-ID: 26367132  |  Reference-DOI: 10.1111/FEBS.13509

(-) Compounds

Molecule 1 - CELLOBIOHYDROLASE I
    Chains: A
    EC Number: 3.2.1.176
    Fragment: CATALYTIC DOMAIN, RESIDUES 18-455
    Organism Scientific: GALACTOMYCES GEOTRICHUM
    Organism Taxid: 1173061
    Strain: 3C
    Synonym: CELLOBIOHYDROLASE CEL7A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 14)

Asymmetric/Biological Unit (7, 14)
No.NameCountTypeFull Name
1CBI1Ligand/IonCELLOBIOSE
2GOL3Ligand/IonGLYCEROL
3MAN1Ligand/IonALPHA-D-MANNOSE
4MG2Ligand/IonMAGNESIUM ION
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PCA1Mod. Amino AcidPYROGLUTAMIC ACID
7PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:175 , HIS A:228 , THR A:246 , ARG A:251 , PRO A:258 , ASP A:259 , ARG A:267 , ASP A:343 , TRP A:380 , ARG A:399 , HOH A:2216 , HOH A:2217 , HOH A:2225 , HOH A:2242 , HOH A:2254 , HOH A:2346 , HOH A:2375BINDING SITE FOR RESIDUE CBI A 801
02AC2SOFTWAREGLN A:69 , TYR A:266 , ARG A:267 , PRO A:392 , THR A:394 , GLY A:396 , VAL A:397 , ALA A:398 , HOH A:2094BINDING SITE FOR RESIDUE GOL A 901
03AC3SOFTWAREARG A:107 , TYR A:145 , TYR A:171 , SER A:369 , TRP A:371BINDING SITE FOR RESIDUE GOL A 902
04AC4SOFTWAREGLY A:326 , ASN A:327 , SER A:328 , THR A:330 , ASP A:332 , HOH A:2314 , HOH A:2315BINDING SITE FOR RESIDUE GOL A 903
05AC5SOFTWAREPRO A:137 , CYS A:138 , SER A:220 , ILE A:221 , ASP A:231 , PRO A:276 , MG A:1440 , HOH A:2164 , HOH A:2376BINDING SITE FOR RESIDUE PEG A 911
06AC6SOFTWAREASN A:37 , TRP A:38 , ASN A:103 , VAL A:104BINDING SITE FOR RESIDUE PEG A 912
07AC7SOFTWAREASP A:64 , ASN A:206 , NAG A:701 , HOH A:2089 , HOH A:2090 , HOH A:2091BINDING SITE FOR RESIDUE MG A1439
08AC8SOFTWAREASN A:283 , PEG A:911 , HOH A:2163 , HOH A:2270 , HOH A:2272BINDING SITE FOR RESIDUE MG A1440
09AC9SOFTWARETHR A:48 , ASN A:57 , LEU A:60 , HOH A:2076BINDING SITE FOR MONO-SACCHARIDE NAG A 704 BOUND TO ASN A 57
10BC1SOFTWARESER A:196BINDING SITE FOR MONO-SACCHARIDE MAN A 706 BOUND TO SER A 196
11BC2SOFTWAREASN A:432BINDING SITE FOR MONO-SACCHARIDE NAG A 705 BOUND TO ASN A 432
12BC3SOFTWAREGLN A:190 , GLY A:191 , GLY A:205 , ASN A:206 , MG A:1439 , HOH A:2212 , HOH A:2235 , HOH A:2372BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 701 THROUGH NAG A 702

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:19 -A:25
2A:50 -A:71
3A:61 -A:67
4A:138 -A:402
5A:172 -A:210
6A:176 -A:209
7A:238 -A:243
8A:261 -A:334

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:386 -Pro A:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZZW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZZW)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZZW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:435
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.........eeeeeee.....eeeeeeeeee.hhhh.eee.......ee..ee......hhhhhhhheee...hhhhhhheeee..eeeee.eee...eee.eeeeeeee..ee.ee....eeeeeeee.......eeeeeeee......hhhhh....hhhhhh.............ee..ee...............eeee..eeeeeee....eeeeee.......eeee.hhhh.............................ee....ee....eeeeeeeee.....eeeeeeeeee..eeee.............eehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhh........................hhhhhhhhh...eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zzw A   1 xQIGTLTTETHPPLTWQTCTSGGSCTTNNGKVVLDANWRWLHSTSGSTNCYTGNTWNTTLCPDDTTCAQNCALDGADYEGTYGITASGNSLRLNFVTNGSQKNVGSRTYLMKDDTHYQTFNLLNQEFTFDVDVSGLPCGLNGALYMVPMAADGGVSNEPNNKAGAQYGVGYCDSQCPRDLKFIAGSANVQGWEPASNSGLGGNGSCCAELDIWEANSISAALTPHSADTVTQTVCNGDDCGGTYSNDRYSGTTDPDGCDFNSYRQGDTSFYGPGKTVDTNSKFTVVTQFLTDSSGNLNEIKRFYVQNGVVIPNSQSTIAGISGNSITQDYCTAQKQVFGDTNTWEDHGGFQSMTNAFKAGMVLVMSLWDDYYADMLWLDSVAYPTDADPSTPGVARGTCSTTSGVPSDIESSAASAYVIYSNIKVGPINSTFSGT 438
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433     
                            |                                                                                                                                                                                                  198|                                                                                                                                                                                                                                            
                            1-PCA                                                                                                                                                                                               202
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZZW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZZW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZZW)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZZW)

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  Cis Peptide Bonds
    Tyr A:386 - Pro A:387   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A088T0J9_G | A0A088T0J9: 4zzt 4zzu 4zzv 5amp

(-) Related Entries Specified in the PDB File

4zzt GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH THIO- LINKED CELLOTRIOSE AT 1.56A
4zzu GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH THIO- LINKED CELLOTETRAOSE AT 1.4A
4zzv GEOTRICHUM CANDIDUM CEL7A APO STRUCTURE AT 1.4A