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(-) Description

Title :  GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH THIO-LINKED CELLOTETRAOSE AT 1.4A
 
Authors :  A. S. Borisova, J. Stahlberg
Date :  14 Apr 15  (Deposition) - 23 Sep 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.44
Chains :  Asym./Biol. Unit :  A
Keywords :  Cellobiohydrolase, Thiocellotetraose, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Borisova, E. V. Eneyskaya, K. S. Bobrov, S. Jana, A. Logachev, D. E. Polev, A. L. Lapidus, F. M. Ibatullin, U. Saleem, M. Sandgren, C. M. Payne, A. A. Kulminskaya, J. Stahlberg
Sequencing, Biochemical Characterization, Crystal Structure And Molecular Dynamics Of Cellobiohydrolase Cel7A From Geotrichum Candidum 3C.
Febs J. V. 282 4515 2015
PubMed-ID: 26367132  |  Reference-DOI: 10.1111/FEBS.13509

(-) Compounds

Molecule 1 - CELLOBIOHYDROLASE I
    Chains: A
    EC Number: 3.2.1.176
    Fragment: CATALYTIC DOMAIN, RESIDUES 18-455
    Organism Scientific: GALACTOMYCES GEOTRICHUM
    Organism Taxid: 27317
    Strain: 3C
    Synonym: CELLOBIOHYDROLASE CEL7A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2GOL1Ligand/IonGLYCEROL
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PCA1Mod. Amino AcidPYROGLUTAMIC ACID
5SGC4Ligand/Ion4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:150 , THR A:234 , ALA A:362 , HOH A:2311 , HOH A:2312 , HOH A:2316 , HOH A:2537 , HOH A:2609BINDING SITE FOR RESIDUE GOL A 801
2AC2SOFTWARETHR A:48 , ASN A:57 , LEU A:60 , HOH A:2117 , HOH A:2139BINDING SITE FOR MONO-SACCHARIDE NAG A 704 BOUND TO ASN A 57
3AC3SOFTWAREGLN A:190 , ASN A:206 , ASN A:239 , HOH A:2171 , HOH A:2398 , HOH A:2602 , HOH A:2603 , HOH A:2604 , HOH A:2605 , HOH A:2606BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 701 THROUGH NAG A 702 BOUND TO ASN A 206
4AC4SOFTWAREPHE A:306 , ASN A:432 , HOH A:2608BINDING SITE FOR MONO-SACCHARIDE NAG A 705 BOUND TO ASN A 432
5AC5SOFTWAREGLN A:175 , HIS A:228 , THR A:246 , ARG A:251 , PRO A:258 , ASP A:259 , ARG A:267 , TRP A:380 , ARG A:399 , HOH A:2373 , HOH A:2381 , HOH A:2414 , HOH A:2421 , HOH A:2541 , HOH A:2547BINDING SITE FOR POLY-SACCHARIDE RESIDUES SGC A1438 THROUGH BGC A1439
6AC6SOFTWAREASN A:37 , TRP A:38 , GLY A:53 , GLN A:101 , LYS A:102 , ASN A:103 , VAL A:104 , ARG A:107 , TYR A:145 , TYR A:171 , ASP A:179 , LEU A:180 , LYS A:181 , ASN A:200 , SER A:369 , TRP A:371 , HOH A:2102 , HOH A:2104 , HOH A:2150 , HOH A:2246 , HOH A:2252 , HOH A:2337 , HOH A:2346 , HOH A:2348 , HOH A:2365 , HOH A:2538 , HOH A:2610 , HOH A:2611BINDING SITE FOR POLY-SACCHARIDE RESIDUES BGC A1440 THROUGH SGC A1443

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:19 -A:25
2A:50 -A:71
3A:61 -A:67
4A:138 -A:402
5A:172 -A:210
6A:176 -A:209
7A:238 -A:243
8A:261 -A:334

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:22 -Gly A:23
2Tyr A:386 -Pro A:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZZU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZZU)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZZU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.........eeeeeee.....eeeeeeeeee.hhhh.eee.......ee..ee......hhhhhhhheee...hhhhhhheeee..eeeee.eee...eee.eeeeeeee..ee.......eeeeeeee........eeeeeee......hhhhh....hhhhhh.............ee..ee.....ee.......ee..eeee..eeeeeee....eeeeee.......eeee.hhhh.............................ee....ee....eeeeeeeee.....eeeeeeeeee..eeee..............hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhh........................hhhhhhhhh...eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zzu A   1 xQIGTLTTETHPPLTWQTCTSGGSCTTNNGKVVLDANWRWLHSTSGSTNCYTGNTWNTTLCPDDTTCAQNCALDGADYEGTYGITASGNSLRLNFVTNGSQKNVGSRTYLMKDDTHYQTFNLLNQEFTFDVDVSGLPCGLNGALYMVPMAADGGVSNEPNNKAGAQYGVGYCDSQCPRDLKFIAGSANVQGWEPASNSANSGLGGNGSCCAELDIWEANSISAALTPHSADTVTQTVCNGDDCGGTYSNDRYSGTTDPDGCDFNSYRQGDTSFYGPGKTVDTNSKFTVVTQFLTDSSGNLNEIKRFYVQNGVVIPNSQSTIAGISGNSITQDYCTAQKQVFGDTNTWEDHGGFQSMTNAFKAGMVLVMSLWDDYYADMLWLDSVAYPTDADPSTPGVARGTCSTTSGVPSDIESSAASAYVIYSNIKVGPINSTFSGT 438
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430        
                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                            1-PCA
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZZU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZZU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZZU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZZU)

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  Cis Peptide Bonds
    Gly A:22 - Gly A:23   [ RasMol ]  
    Tyr A:386 - Pro A:387   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A088T0J9_G | A0A088T0J9: 4zzt 4zzv 4zzw 5amp

(-) Related Entries Specified in the PDB File

4zzt GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH THIO- LINKED CELLOTRIOSE AT 1.56A
4zzv GEOTRICHUM CANDIDUM CEL7A APO STRUCTURE AT 1.4A
4zzw GEOTRICHUM CANDIDUM CEL7A STRUCTURE COMPLEX WITH CELLOBIOSE AT 1.5A