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(-) Description

Title :  APO STRUCTURE OF THE 3-KETOACYL-COA THIOLASE FADA5 FROM M. TUBERCULOSIS
 
Authors :  C. M. Schaefer, C. Kisker
Date :  13 Aug 14  (Deposition) - 17 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Degradative Thiolase, Apo, Mycobacterium Tuberculosis, Cholesterol Metabolism, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Schaefer, R. Lu, N. M. Nesbitt, J. Schiebel, N. S. Sampson, C. Kisker
Fada5 A Thiolase From Mycobacterium Tuberculosis: A Steroid-Binding Pocket Reveals The Potential For Drug Development Against Tuberculosis.
Structure V. 23 21 2015
PubMed-ID: 25482540  |  Reference-DOI: 10.1016/J.STR.2014.10.010

(-) Compounds

Molecule 1 - ACETYL-COA ACETYLTRANSFERASE FADA5
    Chains: A, B
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Expression System Plasmid: PSD31
    Expression System Taxid: 246196
    Gene: FADA5, RV3546, P425_03688, RVBD_3546
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS ATCC 25618 / H37RV
    Organism Taxid: 83332
    Other Details: APO STRUCTURE OF FADA5
    Synonym: PROBABLE ACETYL-COA ACETYLTRANSFERASE FADA5 (ACETOACETYL-COA THIOLASE)

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 34)

Asymmetric/Biological Unit (4, 34)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2DMS26Ligand/IonDIMETHYL SULFOXIDE
3GOL6Ligand/IonGLYCEROL
4NA1Ligand/IonSODIUM ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:64 , GLU A:65 , ARG A:125 , VAL A:126binding site for residue GOL A 401
02AC2SOFTWARELEU A:323 , ALA A:326 , ARG A:327 , MET A:333 , DMS A:406binding site for residue GOL A 402
03AC3SOFTWAREPRO A:195 , ILE A:196binding site for residue GOL A 403
04AC4SOFTWAREARG A:161 , THR A:269binding site for residue GOL A 404
05AC5SOFTWAREPHE A:172 , GLU A:175 , SER A:176 , ARG A:179 , VAL A:336 , ASN A:337 , DMS A:406binding site for residue DMS A 405
06AC6SOFTWAREGOL A:402 , DMS A:405binding site for residue DMS A 406
07AC7SOFTWARETRP A:20 , ARG A:212 , VAL A:214 , PHE A:215 , ARG A:216 , ASP B:190binding site for residue DMS A 407
08AC8SOFTWAREILE A:306 , GLY A:307 , ILE A:309 , PRO A:331 , ASP A:332binding site for residue DMS A 408
09AC9SOFTWAREASN A:18 , SER A:22 , SER A:124 , ARG A:125binding site for residue DMS A 409
10AD1SOFTWAREASP A:51 , VAL A:262 , HIS A:266 , GLY B:50binding site for residue DMS A 410
11AD2SOFTWAREARG A:178 , ARG A:182binding site for residue DMS A 411
12AD3SOFTWAREARG A:17 , ILE A:248binding site for residue DMS A 412
13AD4SOFTWAREPRO A:207 , THR A:208 , GLU B:283binding site for residue DMS A 413
14AD5SOFTWAREARG A:221 , GLU A:222 , THR A:223 , THR A:224 , GLY A:227 , LEU A:228 , LEU A:231binding site for residue DMS A 414
15AD6SOFTWAREALA B:185binding site for residue DMS A 415
16AD7SOFTWARELYS A:301binding site for residue DMS A 416
17AD8SOFTWAREASN A:18 , LEU A:201 , ARG A:212binding site for residue DMS A 417
18AD9SOFTWAREARG A:366binding site for residue DMS A 420
19AE1SOFTWAREHOH A:510 , GLY B:46 , LEU B:47 , HIS B:266binding site for residue DMS A 421
20AE2SOFTWAREVAL B:171 , PHE B:172 , GLU B:175 , ARG B:179 , CL B:413binding site for residue GOL B 401
21AE3SOFTWARETRP B:20 , ARG B:212binding site for residue GOL B 402
22AE4SOFTWARETRP B:20 , ARG B:212 , LEU B:213 , VAL B:214 , PHE B:215 , ARG B:216binding site for residue DMS B 403
23AE5SOFTWAREARG B:178 , GLN B:181 , GLU B:222 , THR B:223binding site for residue DMS B 404
24AE6SOFTWAREGLU A:82 , SER B:45 , ALA B:282binding site for residue DMS B 405
25AE7SOFTWAREARG B:182binding site for residue DMS B 406
26AE8SOFTWAREASP B:332 , ARG B:335binding site for residue DMS B 407
27AE9SOFTWAREILE B:306 , ILE B:309 , ASP B:332 , ARG B:335binding site for residue DMS B 408
28AF1SOFTWAREGLN B:181binding site for residue DMS B 411
29AF2SOFTWAREGLN A:54 , GLN B:98 , HIS B:101 , GLN B:277 , LEU B:279binding site for residue NA B 412
30AF3SOFTWAREGLU B:175 , ARG B:179 , GOL B:401binding site for residue CL B 413

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UBW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UBW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UBW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UBW)

(-) Exons   (0, 0)

(no "Exon" information available for 4UBW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:385
                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhh...........eeeee....hhhhh.hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.....................hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.........eeeeee.....eeeeeeee.........hhhhhhh..................eeeeeeeeeeehhhhhhh.....eeeeeeeeee.......hhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh....hhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubw A   1 MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQCGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386     
                                                                                                                                                                  137|                                                                                                                                                                                                                                                       
                                                                                                                                                                   144                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee...........................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eeeeee.....eeeeeeee.........hhhhhhh..................eeeeeeeeeeehhhhhhh.....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubw B   1 MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQCGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UBW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UBW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UBW)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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UniProtKB/Swiss-Prot
        FADA5_MYCTU | I6XHI4: 4ubt 4ubu 4ubv

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