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(-) Description

Title :  STRUCTURE OF THE 3-KETOACYL-COA THIOLASE FADA5 FROM M. TUBERCULOSIS WITH AN PARTIALLY ACETYLATED CYSTEINE IN COMPLEX WITH ACETYL-COA AND COA
 
Authors :  C. M. Schaefer, C. Kisker
Date :  13 Aug 14  (Deposition) - 17 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Partially Acetylated Degradative Thiolase, Acetyl-Coa, Coa, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Schaefer, R. Lu, N. M. Nesbitt, J. Schiebel, N. S. Sampson, C. Kisker
Fada5 A Thiolase From Mycobacterium Tuberculosis: A Steroid-Binding Pocket Reveals The Potential For Drug Development Against Tuberculosis.
Structure V. 23 21 2015
PubMed-ID: 25482540  |  Reference-DOI: 10.1016/J.STR.2014.10.010

(-) Compounds

Molecule 1 - ACETYL-COA ACETYLTRANSFERASE FADA5
    Atcc: 25618
    Chains: A, B
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Expression System Plasmid: PSD31
    Expression System Taxid: 246196
    Gene: FADA5, RV3546, P425_03688, RVBD_3546
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS H37RV
    Organism Taxid: 83332
    Other Details: THE THIOLASE FADA5 IN COMPLEX WITH ACETYL-COA AND COA;
THE THIOLASE IS PARTIALLY COVALENTLY MODIFIED AT C93 (ACETYLATED)
    Synonym: PROBABLE ACETYL-COA ACETYLTRANSFERASE FADA5 (ACETOACETYL-COA THIOLASE)

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 27)

Asymmetric/Biological Unit (6, 27)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2COA2Ligand/IonCOENZYME A
3DIO7Ligand/Ion1,4-DIETHYLENE DIOXIDE
4GOL12Ligand/IonGLYCEROL
5SCY2Mod. Amino AcidS-ACETYL-CYSTEINE
6SO43Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREDIO A:406 , ARG B:162 , HOH B:503binding site for residue SO4 A 403
02AC2SOFTWAREGLU A:28 , ILE A:196 , GLN A:197binding site for residue SO4 A 404
03AC3SOFTWAREARG A:17 , ASN A:18binding site for residue DIO A 405
04AC4SOFTWAREARG A:264 , SO4 A:403 , VAL B:292binding site for residue DIO A 406
05AC5SOFTWARETRP A:20 , ARG A:212 , HOH A:624binding site for residue GOL A 407
06AC6SOFTWAREGLY A:46 , PRO A:81 , GLU A:82 , HIS A:83 , HOH A:503binding site for residue GOL A 408
07AC7SOFTWAREARG A:161 , ARG A:162 , GLY A:163binding site for residue GOL A 409
08AC8SOFTWAREMET A:333 , HOH A:522binding site for residue GOL A 410
09AC9SOFTWARELYS B:16 , ARG B:17 , SCY B:93 , LEU B:128 , GLN B:151 , PHE B:152 , ARG B:221 , GLU B:222 , THR B:223 , LEU B:231 , ALA B:242 , GLY B:243 , SER B:245 , SER B:246 , ILE B:248 , ALA B:317 , PHE B:318 , HIS B:347 , VAL B:349 , HOH B:556 , HOH B:566 , HOH B:571 , HOH B:597 , HOH B:599 , HOH B:632 , HOH B:633 , HOH B:635 , HOH B:639binding site for residue COA B 401
10AD1SOFTWAREVAL B:275 , ALA B:302binding site for residue SO4 B 402
11AD2SOFTWAREHIS B:48 , ALA B:49 , GLY B:50 , PRO B:81 , GOL B:408 , HOH B:645binding site for residue DIO B 403
12AD3SOFTWAREASP A:190 , LEU B:213 , VAL B:214 , PHE B:215 , ARG B:216binding site for residue DIO B 404
13AD4SOFTWAREMET B:225binding site for residue DIO B 405
14AD5SOFTWARETRP A:20 , PHE A:215 , ARG A:216binding site for residue DIO B 406
15AD6SOFTWARETRP B:20 , ARG B:212 , GOL B:414 , HOH B:630 , HOH B:640binding site for residue DIO B 407
16AD7SOFTWAREHIS B:48 , PRO B:81 , GLU B:82 , HIS B:83 , DIO B:403binding site for residue GOL B 408
17AD8SOFTWARELEU B:128 , ARG B:136binding site for residue GOL B 409
18AD9SOFTWAREALA B:326 , GLU B:330 , PRO B:331 , MET B:333 , GOL B:411binding site for residue GOL B 410
19AE1SOFTWARELEU B:323 , MET B:333 , GOL B:410 , HOH B:572binding site for residue GOL B 411
20AE2SOFTWAREARG B:178 , ARG B:182 , GOL B:413 , HOH B:581binding site for residue GOL B 412
21AE3SOFTWAREGLU B:175 , ARG B:178 , ARG B:179 , ARG B:182 , ASP B:334 , GOL B:412 , HOH B:568binding site for residue GOL B 413
22AE4SOFTWAREDIO B:407 , GOL B:415binding site for residue GOL B 414
23AE5SOFTWAREGLU A:186 , LEU B:220 , GOL B:414binding site for residue GOL B 415

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UBV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UBV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UBV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UBV)

(-) Exons   (0, 0)

(no "Exon" information available for 4UBV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:392
                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehh..hhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........eeeeee.....eeeeeeee.........hhhhhhh..........hhhhh...eeeeeeeeeeehhhhhhh.....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh....hhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubv A   1 MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQCxGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                    10        20        30        40        50        60        70        80        90   |    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389  
                                                                                                                        93-SCY                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee...ee........hhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehh..hhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubv B   0 SMGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQCxGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                     9        19        29        39        49        59        69        79        89    |   98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388   
                                                                                                                         93-SCY
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UBV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UBV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UBV)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FADA5_MYCTU | I6XHI4: 4ubt 4ubu 4ubw

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