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4CYZ
Asym. Unit
Info
Asym.Unit (509 KB)
Biol.Unit 1 (499 KB)
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(1)
Title
:
STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOG LSTA
Authors
:
S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. H J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Date
:
16 Apr 14 (Deposition) - 11 Jun 14 (Release) - 30 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. Haire, Y. Zhang, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Receptor Binding By H10 Influenza Viruses.
Nature V. 511 475 2014
[
close entry info
]
Hetero Components
(6, 38)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6a: O-SIALIC ACID (SIAa)
6b: O-SIALIC ACID (SIAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SIA
2
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MAN B:207
BINDING SITE FOR RESIDUE NAG B 208
02
AC2
SOFTWARE
GLU B:150 , ASN B:154 , THR B:156
BINDING SITE FOR RESIDUE NAG B 211
03
AC3
SOFTWARE
GLN A:269 , TRP A:283 , ARG A:284 , ARG A:300 , HOH A:2104 , HOH A:2131 , GLU B:69
BINDING SITE FOR RESIDUE EDO A1326
04
AC4
SOFTWARE
PRO A:299 , EDO A:1327 , EDO A:1328 , LYS B:85 , THR B:89 , TRP F:83
BINDING SITE FOR RESIDUE EDO B1173
05
AC5
SOFTWARE
GLN A:295 , THR A:301 , CYS A:305 , PRO A:306 , LYS A:307 , TYR A:308 , EDO A:1328 , EDO B:1173
BINDING SITE FOR RESIDUE EDO A1327
06
AC6
SOFTWARE
THR A:301 , LYS A:307 , EDO A:1327 , HOH A:2116 , HOH A:2132 , PHE B:63 , EDO B:1173 , TRP F:83
BINDING SITE FOR RESIDUE EDO A1328
07
AC7
SOFTWARE
ASN B:79 , GLN C:110 , GLU C:114 , HOH C:2052 , HOH C:2095 , GLU D:64 , SER D:65
BINDING SITE FOR RESIDUE EDO C1326
08
AC8
SOFTWARE
GLN C:269 , ARG C:300 , HOH C:2123 , GLU D:69
BINDING SITE FOR RESIDUE EDO C1327
09
AC9
SOFTWARE
TRP D:83 , PRO E:299 , HOH E:2049 , LYS F:85 , ILE F:88 , THR F:89
BINDING SITE FOR RESIDUE EDO F1173
10
BC1
SOFTWARE
TRP D:83 , HOH D:2022 , THR E:301 , LYS E:307 , HOH E:2044 , HOH E:2048 , PHE F:63
BINDING SITE FOR RESIDUE EDO E1326
11
BC2
SOFTWARE
ARG E:284 , GLU F:69
BINDING SITE FOR RESIDUE EDO F1174
12
BC3
SOFTWARE
LEU E:70 , LEU E:177 , MET E:179 , PRO E:254 , ARG E:256 , VAL E:257 , SER E:258
BINDING SITE FOR RESIDUE EDO E1327
13
BC4
SOFTWARE
THR E:73 , PRO E:74 , ALA E:75 , ILE E:94 , CYS E:97
BINDING SITE FOR RESIDUE EDO E1328
14
BC5
SOFTWARE
ASN A:38 , ALA A:39 , THR A:40
BINDING SITE FOR MONO-SACCHARIDE NAG A 420 BOUND TO ASN A 38
15
BC6
SOFTWARE
ARG A:169 , GLY A:240 , ASP A:241 , ASN A:242
BINDING SITE FOR MONO-SACCHARIDE NAG A 401 BOUND TO ASN A 242
16
BC7
SOFTWARE
MET A:53 , LYS A:54 , HIS A:58 , ASP A:275 , CYS A:277 , HOH A:2106
BINDING SITE FOR LIGAND ASN A 276A BOUND TO ASN A 269
17
BC8
SOFTWARE
HOH A:2109 , HIS B:75 , ASN B:79 , ASN B:82 , NAG B:208 , HOH B:2061 , GLU C:114 , ARG C:264
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 201 THROUGH MAN B 207 BOUND TO ASN B 82
18
BC9
SOFTWARE
ASN C:38
BINDING SITE FOR MONO-SACCHARIDE NAG C 420 BOUND TO ASN C 38
19
CC1
SOFTWARE
ARG C:169 , GLY C:240 , ASN C:242
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 401 THROUGH NAG C 402 BOUND TO ASN C 242
20
CC2
SOFTWARE
ARG C:300 , HIS D:75 , ASN D:79 , ASN D:82 , HOH D:2025 , HOH D:2026 , GLU E:114
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D 201 THROUGH MAN D 207 BOUND TO ASN D 82
21
CC3
SOFTWARE
ARG E:169 , GLY E:240 , ASN E:242
BINDING SITE FOR MONO-SACCHARIDE NAG E 401 BOUND TO ASN E 242
22
CC4
SOFTWARE
GLU A:114 , GLY A:263 , ARG A:264 , HIS F:75 , ASN F:79 , ASN F:82 , HOH F:2020 , HOH F:2021
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG F 201 THROUGH MAN F 204 BOUND TO ASN F 82
23
CC5
SOFTWARE
TYR A:98 , THR A:135 , THR A:136 , LYS A:137 , TRP A:153 , HIS A:183 , GLU A:190 , GLN A:226 , GLY A:228
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A 409 THROUGH NAG A 411
24
CC6
SOFTWARE
TYR A:98 , THR A:135 , THR A:136 , LYS A:137 , TRP A:153 , HIS A:183 , GLU A:190 , GLN A:226 , GLY A:228 , TYR E:98 , THR E:135 , THR E:136 , LYS E:137 , TRP E:153 , HIS E:183 , GLU E:190 , LEU E:194 , GLN E:226 , GLY E:228 , HOH E:2026
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA E 409 THROUGH GAL E 410
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Chain F
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (509 KB)
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